Schema for Inhibit Topoisomerases PolII ChIP-Seq - PolII ChIP-Seq After Inhibition of Topoisomerases

Database: dm6 Primary Table: GSE47795_PolII_ICRF_macs Row Count: 36,852 Data last updated: 2022-10-20

field	example	SQL type	info
`bin`	585	`smallint(5) unsigned`	range
`chrom`	chr2L	`varchar(255)`	values
`chromStart`	8082	`int(10) unsigned`	range
`chromEnd`	8372	`int(10) unsigned`	range
`name`	GSE47795_PolII_ICRF_macs_pe...	`varchar(255)`	values
`score`	67	`int(10) unsigned`	range
`strand`	.	`char(1)`	values
`signalValue`	2.22511	`float`	range
`pValue`	8.76258	`float`	range
`qValue`	6.71388	`float`	range
`peak`	203	`int(11)`	range

Sample Rows

bin	chrom	chromStart	chromEnd	name	score	strand	signalValue	pValue	qValue	peak
585	chr2L	8082	8372	GSE47795_PolII_ICRF_macs_peak_1	67	.	2.22511	8.76258	6.71388	203
585	chr2L	14383	14712	GSE47795_PolII_ICRF_macs_peak_2a	43	.	1.90846	6.14734	4.39957	61
585	chr2L	14383	14712	GSE47795_PolII_ICRF_macs_peak_2b	123	.	2.61077	14.8364	12.3712	222
585	chr2L	15200	15610	GSE47795_PolII_ICRF_macs_peak_3	44	.	1.92321	6.18111	4.4294	55
585	chr2L	21881	22018	GSE47795_PolII_ICRF_macs_peak_4	99	.	2.56834	12.2314	9.90796	74
585	chr2L	22728	23032	GSE47795_PolII_ICRF_macs_peak_5	21	.	1.67655	3.5066	2.19311	221
585	chr2L	32317	32493	GSE47795_PolII_ICRF_macs_peak_6	25	.	1.62837	3.98973	2.59224	43
585	chr2L	33774	33946	GSE47795_PolII_ICRF_macs_peak_7	26	.	1.63914	4.02025	2.61824	96
585	chr2L	37244	37393	GSE47795_PolII_ICRF_macs_peak_8	52	.	1.95757	7.1763	5.29671	75
585	chr2L	45997	47442	GSE47795_PolII_ICRF_macs_peak_9a	164	.	3.0565	19.1125	16.4691	187

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

Inhibit Topoisomerases PolII ChIP-Seq (GSE47795_polII_chipseq) Track Description


	Description These tracks show the regions in the D. melanogaster genome that are significantly enriched in RNA Polymerase II (PolII) in S2 cells as determined by MACS2. The samples were treated with Camptothecin to inhibit topoisomerase I (Top1), and treated with ICRF-193 to inhibit topoisomerase II (Top2). The Irreproducible Discovery Rate (IDR) peak calls were produced by the idr program using a global IDR threshold of 0.05. The PolII ChIP-Seq datasets were obtained from the NCBI Gene Expression Omnibus database under the accession number GSE47795. References Teves SS, Henikoff S. Transcription-generated torsional stress destabilizes nucleosomes. Nat Struct Mol Biol. 2014 Jan;21(1):88-94. Zhang Y, Liu T, Meyer CA, Eeckhoute J, Johnson DS, Bernstein BE, Nusbaum C, Myers RM, Brown M, Li W, Liu XS. Model-based analysis of ChIP-Seq (MACS). Genome Biol. 2008;9(9):R137. doi: 10.1186/gb-2008-9-9-r137. Epub 2008 Sep 17.

Description