Schema for RNA PolII X-ChIP-Seq - RNA PolII X-ChIP-Seq for Drosophila S2 Cells

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Schema for RNA PolII X-ChIP-Seq - RNA PolII X-ChIP-Seq for Drosophila S2 Cells

Database: dm6 Primary Table: GSE67454_polII_macs_logLR Row Count: 1 Data last updated: 2022-10-20

field	example	SQL type	info
`fileName`	/gbdb/dm6/bbi/XChIP/GSE6745...	`varchar(255)`	values

Sample Rows

fileName
/gbdb/dm6/bbi/XChIP/GSE67454_polII_macs_logLR.bw

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

RNA PolII X-ChIP-Seq (GSE67454_XChIPSeq) Track Description


	Description These tracks show the regions that are enriched in RNA Polymerase II (Rpb3) as identified by the crosslinking ChIP-seq protocol (X-ChIP-Seq). The peak calls and the log likelihood ratios were determined by MACS2. The dataset was retrieved from the Gene Expression Omnibus database at NCBI under the accession number GSM1647362. The results were lifted from the D. melanogaster release 5 assembly to the release 6 assembly. Credits Skene PJ, Henikoff S. A simple method for generating high-resolution maps of genome-wide protein binding. Elife. 2015 Jun 16;4:e09225. Zhang Y et al. Model-based analysis of ChIP-Seq (MACS). Genome Biol. 2008;9(9):R137.