Schema for ChIP-Seq MBT Embryos - ChIP-Seq of Embryos Under Midblastula Transition

Database: dm6 Primary Table: GSE41700_H3Ac_MBT_1_macs Row Count: 5,793 Data last updated: 2022-10-20

field	example	SQL type	info
`bin`	585	`smallint(5) unsigned`	range
`chrom`	chr2L	`varchar(255)`	values
`chromStart`	17483	`int(10) unsigned`	range
`chromEnd`	17701	`int(10) unsigned`	range
`name`	GSE41700_H3Ac_MBT_rep1_peak_1	`varchar(255)`	values
`score`	37	`int(10) unsigned`	range
`strand`	.	`char(1)`	values
`signalValue`	3.546	`float`	range
`pValue`	5.78466	`float`	range
`qValue`	3.7682	`float`	range
`peak`	87	`int(11)`	range

Sample Rows

bin	chrom	chromStart	chromEnd	name	score	strand	signalValue	pValue	qValue	peak
585	chr2L	17483	17701	GSE41700_H3Ac_MBT_rep1_peak_1	37	.	3.546	5.78466	3.7682	87
585	chr2L	17783	18566	GSE41700_H3Ac_MBT_rep1_peak_2	234	.	7.13132	26.1785	23.4377	321
585	chr2L	20260	20465	GSE41700_H3Ac_MBT_rep1_peak_3	44	.	3.7824	6.48569	4.43052	83
585	chr2L	20520	21353	GSE41700_H3Ac_MBT_rep1_peak_4a	435	.	11.9907	46.8083	43.5141	443
585	chr2L	20520	21353	GSE41700_H3Ac_MBT_rep1_peak_4b	331	.	10.5264	36.1378	33.1199	680
585	chr2L	26809	26975	GSE41700_H3Ac_MBT_rep1_peak_5	62	.	4.169	8.36004	6.21632	81
585	chr2L	27447	27705	GSE41700_H3Ac_MBT_rep1_peak_6	29	.	3.1089	4.92208	2.96605	34
585	chr2L	27876	28042	GSE41700_H3Ac_MBT_rep1_peak_7	76	.	4.70614	9.8117	7.60566	83
585	chr2L	28364	28520	GSE41700_H3Ac_MBT_rep1_peak_8	42	.	3.34186	6.26158	4.22224	49
585	chr2L	86479	86661	GSE41700_H3Ac_MBT_rep1_peak_9	27	.	2.91216	4.69951	2.75566	40

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

ChIP-Seq MBT Embryos (MBTChIPSeq) Track Description


	Description These tracks show the results of the ChIP-Seq analyses of histone modifications, RNA Polymerase II, and TATA-binding protein (TBP) for Drosophila embryos during the midblastula transition (MBT). The peak calls and the log likelihood ratio evidence tracks were produced by MACS. Credits The datasets were retrieved from the Gene Expression Omnibus database at NCBI under the accession number GSE41700. Chen K, Johnston J, Shao W, Meier S, Staber C, Zeitlinger J. A global change in RNA polymerase II pausing during the Drosophila midblastula transition. Elife. 2013 Aug 13;2:e00861.

Description