Schema for ChIP-Seq MBT Embryos - ChIP-Seq of Embryos Under Midblastula Transition

Database: dm6 Primary Table: GSE41700_H3Ac_MBT_2_macs Row Count: 12,283 Data last updated: 2022-10-20

field	example	SQL type	info
`bin`	585	`smallint(5) unsigned`	range
`chrom`	chr2L	`varchar(255)`	values
`chromStart`	17124	`int(10) unsigned`	range
`chromEnd`	18612	`int(10) unsigned`	range
`name`	GSE41700_H3Ac_MBT_rep2_peak_1c	`varchar(255)`	values
`score`	1171	`int(10) unsigned`	range
`strand`	.	`char(1)`	values
`signalValue`	13.4011	`float`	range
`pValue`	120.981	`float`	range
`qValue`	117.125	`float`	range
`peak`	1270	`int(11)`	range

Sample Rows

bin	chrom	chromStart	chromEnd	name	score	strand	signalValue	pValue	qValue	peak
585	chr2L	17124	18612	GSE41700_H3Ac_MBT_rep2_peak_1c	1171	.	13.4011	120.981	117.125	1270
585	chr2L	17124	18612	GSE41700_H3Ac_MBT_rep2_peak_1a	522	.	8.36378	54.9293	52.2976	373
585	chr2L	17124	18612	GSE41700_H3Ac_MBT_rep2_peak_1b	1009	.	10.7041	104.391	100.924	1066
585	chr2L	19592	19781	GSE41700_H3Ac_MBT_rep2_peak_2	30	.	2.33826	4.66747	3.05449	133
585	chr2L	19823	21428	GSE41700_H3Ac_MBT_rep2_peak_3d	1117	.	12.7638	115.493	111.774	1364
585	chr2L	19823	21428	GSE41700_H3Ac_MBT_rep2_peak_3a	57	.	2.87786	7.49335	5.74612	111
585	chr2L	19823	21428	GSE41700_H3Ac_MBT_rep2_peak_3b	439	.	7.55438	46.4273	43.925	459
585	chr2L	19823	21428	GSE41700_H3Ac_MBT_rep2_peak_3c	1124	.	12.9042	116.234	112.499	1216
585	chr2L	21833	22174	GSE41700_H3Ac_MBT_rep2_peak_4b	56	.	2.83736	7.3431	5.60472	232
585	chr2L	21833	22174	GSE41700_H3Ac_MBT_rep2_peak_4a	83	.	3.30794	10.1332	8.30216	117

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

ChIP-Seq MBT Embryos (MBTChIPSeq) Track Description


	Description These tracks show the results of the ChIP-Seq analyses of histone modifications, RNA Polymerase II, and TATA-binding protein (TBP) for Drosophila embryos during the midblastula transition (MBT). The peak calls and the log likelihood ratio evidence tracks were produced by MACS. Credits The datasets were retrieved from the Gene Expression Omnibus database at NCBI under the accession number GSE41700. Chen K, Johnston J, Shao W, Meier S, Staber C, Zeitlinger J. A global change in RNA polymerase II pausing during the Drosophila midblastula transition. Elife. 2013 Aug 13;2:e00861.

Description