Schema for ChIP-Seq MBT Embryos - ChIP-Seq of Embryos Under Midblastula Transition

Database: dm6 Primary Table: GSE41700_H3K27me3_MBT_1_macs Row Count: 5,044 Data last updated: 2022-10-20

field	example	SQL type	info
`bin`	585	`smallint(5) unsigned`	range
`chrom`	chr2L	`varchar(255)`	values
`chromStart`	277	`int(10) unsigned`	range
`chromEnd`	9360	`int(10) unsigned`	range
`name`	GSE41700_H3K27me3_MBT_rep1_...	`varchar(255)`	values
`score`	36	`int(10) unsigned`	range
`strand`	.	`char(1)`	values
`signalValue`	2.24783	`float`	range
`pValue`	5.80191	`float`	range
`qValue`	3.69881	`float`	range

Sample Rows

bin	chrom	chromStart	chromEnd	name	score	strand	signalValue	pValue	qValue
585	chr2L	277	9360	GSE41700_H3K27me3_MBT_rep1_peak_1	36	.	2.24783	5.80191	3.69881
585	chr2L	17586	18303	GSE41700_H3K27me3_MBT_rep1_peak_2	13	.	1.82664	3.18839	1.38159
585	chr2L	21016	21362	GSE41700_H3K27me3_MBT_rep1_peak_3	10	.	1.74301	2.78245	1.07607
585	chr2L	48867	49435	GSE41700_H3K27me3_MBT_rep1_peak_4	12	.	1.67798	2.98417	1.22596
585	chr2L	50229	51294	GSE41700_H3K27me3_MBT_rep1_peak_5	15	.	1.74094	3.40334	1.55293
586	chr2L	159197	159847	GSE41700_H3K27me3_MBT_rep1_peak_6	15	.	1.89411	3.44759	1.58257
586	chr2L	249794	250730	GSE41700_H3K27me3_MBT_rep1_peak_7	18	.	1.91238	3.72799	1.82366
587	chr2L	277664	277847	GSE41700_H3K27me3_MBT_rep1_peak_8	27	.	2.0126	4.73669	2.7094
587	chr2L	349703	349980	GSE41700_H3K27me3_MBT_rep1_peak_9	14	.	1.83786	3.24137	1.42118
587	chr2L	350816	352155	GSE41700_H3K27me3_MBT_rep1_peak_10	17	.	1.89655	3.61676	1.74108

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

ChIP-Seq MBT Embryos (MBTChIPSeq) Track Description


	Description These tracks show the results of the ChIP-Seq analyses of histone modifications, RNA Polymerase II, and TATA-binding protein (TBP) for Drosophila embryos during the midblastula transition (MBT). The peak calls and the log likelihood ratio evidence tracks were produced by MACS. Credits The datasets were retrieved from the Gene Expression Omnibus database at NCBI under the accession number GSE41700. Chen K, Johnston J, Shao W, Meier S, Staber C, Zeitlinger J. A global change in RNA polymerase II pausing during the Drosophila midblastula transition. Elife. 2013 Aug 13;2:e00861.

Description