Schema for ChIP-Seq MBT Embryos - ChIP-Seq of Embryos Under Midblastula Transition

Database: dm6 Primary Table: GSE41700_H3K4me3_MBT_1_macs Row Count: 9,775 Data last updated: 2022-10-20

field	example	SQL type	info
`bin`	585	`smallint(5) unsigned`	range
`chrom`	chr2L	`varchar(255)`	values
`chromStart`	17390	`int(10) unsigned`	range
`chromEnd`	18612	`int(10) unsigned`	range
`name`	GSE41700_H3K4me3_MBT_rep1_p...	`varchar(255)`	values
`score`	1805	`int(10) unsigned`	range
`strand`	.	`char(1)`	values
`signalValue`	12.8228	`float`	range
`pValue`	183.029	`float`	range
`qValue`	180.561	`float`	range
`peak`	730	`int(11)`	range

Sample Rows

bin	chrom	chromStart	chromEnd	name	score	strand	signalValue	pValue	qValue	peak
585	chr2L	17390	18612	GSE41700_H3K4me3_MBT_rep1_peak_1b	1805	.	12.8228	183.029	180.561	730
585	chr2L	17390	18612	GSE41700_H3K4me3_MBT_rep1_peak_1a	179	.	4.39232	19.6243	17.9314	233
585	chr2L	20229	21444	GSE41700_H3K4me3_MBT_rep1_peak_2a	258	.	5.27078	27.5975	25.8514	171
585	chr2L	20229	21444	GSE41700_H3K4me3_MBT_rep1_peak_2b	1989	.	15.0391	201.595	198.98	702
585	chr2L	20229	21444	GSE41700_H3K4me3_MBT_rep1_peak_2c	2211	.	18.8582	223.989	221.12	914
585	chr2L	21848	22350	GSE41700_H3K4me3_MBT_rep1_peak_3	462	.	7.11089	48.1424	46.2926	131
585	chr2L	67042	67751	GSE41700_H3K4me3_MBT_rep1_peak_4a	117	.	3.59314	13.4314	11.7916	145
585	chr2L	67042	67751	GSE41700_H3K4me3_MBT_rep1_peak_4b	127	.	3.75343	14.4066	12.7572	579
585	chr2L	85813	87277	GSE41700_H3K4me3_MBT_rep1_peak_5a	56	.	2.71525	7.21159	5.64629	117
585	chr2L	85813	87277	GSE41700_H3K4me3_MBT_rep1_peak_5b	64	.	2.78636	8.00531	6.42886	261

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

ChIP-Seq MBT Embryos (MBTChIPSeq) Track Description


	Description These tracks show the results of the ChIP-Seq analyses of histone modifications, RNA Polymerase II, and TATA-binding protein (TBP) for Drosophila embryos during the midblastula transition (MBT). The peak calls and the log likelihood ratio evidence tracks were produced by MACS. Credits The datasets were retrieved from the Gene Expression Omnibus database at NCBI under the accession number GSE41700. Chen K, Johnston J, Shao W, Meier S, Staber C, Zeitlinger J. A global change in RNA polymerase II pausing during the Drosophila midblastula transition. Elife. 2013 Aug 13;2:e00861.

Description