Schema for ChIP-Seq MBT Embryos - ChIP-Seq of Embryos Under Midblastula Transition

Database: dm6 Primary Table: GSE41700_H3K4me3_MBT_2_macs Row Count: 11,628 Data last updated: 2022-10-20

field	example	SQL type	info
`bin`	585	`smallint(5) unsigned`	range
`chrom`	chr2L	`varchar(255)`	values
`chromStart`	16717	`int(10) unsigned`	range
`chromEnd`	18839	`int(10) unsigned`	range
`name`	GSE41700_H3K4me3_MBT_rep2_p...	`varchar(255)`	values
`score`	4101	`int(10) unsigned`	range
`strand`	.	`char(1)`	values
`signalValue`	62.2362	`float`	range
`pValue`	414.435	`float`	range
`qValue`	410.107	`float`	range
`peak`	1603	`int(11)`	range

Sample Rows

bin	chrom	chromStart	chromEnd	name	score	strand	signalValue	pValue	qValue	peak
585	chr2L	16717	18839	GSE41700_H3K4me3_MBT_rep2_peak_1c	4101	.	62.2362	414.435	410.107	1603
585	chr2L	16717	18839	GSE41700_H3K4me3_MBT_rep2_peak_1a	47	.	3.65866	6.24227	4.71918	92
585	chr2L	16717	18839	GSE41700_H3K4me3_MBT_rep2_peak_1b	54	.	3.88732	6.95037	5.41343	452
585	chr2L	18902	19108	GSE41700_H3K4me3_MBT_rep2_peak_2	46	.	3.64039	6.20606	4.68672	93
585	chr2L	19913	22272	GSE41700_H3K4me3_MBT_rep2_peak_3d	749	.	17.7976	76.8777	74.9122	2049
585	chr2L	19913	22272	GSE41700_H3K4me3_MBT_rep2_peak_3a	1240	.	25.8393	126.132	124.004	433
585	chr2L	19913	22272	GSE41700_H3K4me3_MBT_rep2_peak_3b	3958	.	59.5517	399.662	395.811	1075
585	chr2L	19913	22272	GSE41700_H3K4me3_MBT_rep2_peak_3c	4008	.	60.0136	404.836	400.832	1242
585	chr2L	27436	27863	GSE41700_H3K4me3_MBT_rep2_peak_4b	84	.	4.67777	10.075	8.48848	319
585	chr2L	27436	27863	GSE41700_H3K4me3_MBT_rep2_peak_4a	74	.	4.35709	9.06253	7.49298	97

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

ChIP-Seq MBT Embryos (MBTChIPSeq) Track Description


	Description These tracks show the results of the ChIP-Seq analyses of histone modifications, RNA Polymerase II, and TATA-binding protein (TBP) for Drosophila embryos during the midblastula transition (MBT). The peak calls and the log likelihood ratio evidence tracks were produced by MACS. Credits The datasets were retrieved from the Gene Expression Omnibus database at NCBI under the accession number GSE41700. Chen K, Johnston J, Shao W, Meier S, Staber C, Zeitlinger J. A global change in RNA polymerase II pausing during the Drosophila midblastula transition. Elife. 2013 Aug 13;2:e00861.

Description