Schema for ChIP-Seq MBT Embryos - ChIP-Seq of Embryos Under Midblastula Transition

Database: dm6 Primary Table: GSE41700_PolII_MBT_1_macs Row Count: 20,900 Data last updated: 2022-10-20

field	example	SQL type	info
`bin`	585	`smallint(5) unsigned`	range
`chrom`	chr2L	`varchar(255)`	values
`chromStart`	5463	`int(10) unsigned`	range
`chromEnd`	6040	`int(10) unsigned`	range
`name`	GSE41700_PolII_MBT_rep1_peak_1	`varchar(255)`	values
`score`	108	`int(10) unsigned`	range
`strand`	.	`char(1)`	values
`signalValue`	2.56791	`float`	range
`pValue`	12.3749	`float`	range
`qValue`	10.8003	`float`	range
`peak`	190	`int(11)`	range

Sample Rows

bin	chrom	chromStart	chromEnd	name	score	strand	signalValue	pValue	qValue	peak
585	chr2L	5463	6040	GSE41700_PolII_MBT_rep1_peak_1	108	.	2.56791	12.3749	10.8003	190
585	chr2L	6338	7361	GSE41700_PolII_MBT_rep1_peak_2a	106	.	2.91705	12.2113	10.6389	299
585	chr2L	6338	7361	GSE41700_PolII_MBT_rep1_peak_2b	101	.	2.86587	11.7201	10.1581	432
585	chr2L	6338	7361	GSE41700_PolII_MBT_rep1_peak_2c	74	.	2.55881	8.93554	7.44048	764
585	chr2L	7428	10475	GSE41700_PolII_MBT_rep1_peak_3a	113	.	2.94684	12.9487	11.363	166
585	chr2L	7428	10475	GSE41700_PolII_MBT_rep1_peak_3b	109	.	2.73571	12.5671	10.9888	576
585	chr2L	7428	10475	GSE41700_PolII_MBT_rep1_peak_3c	235	.	3.97647	25.3545	23.579	831
585	chr2L	7428	10475	GSE41700_PolII_MBT_rep1_peak_3d	91	.	2.72931	10.72	9.18242	1141
585	chr2L	7428	10475	GSE41700_PolII_MBT_rep1_peak_3e	109	.	2.7766	12.5233	10.9459	1311
585	chr2L	7428	10475	GSE41700_PolII_MBT_rep1_peak_3f	128	.	2.97619	14.451	12.8368	1513

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

ChIP-Seq MBT Embryos (MBTChIPSeq) Track Description


	Description These tracks show the results of the ChIP-Seq analyses of histone modifications, RNA Polymerase II, and TATA-binding protein (TBP) for Drosophila embryos during the midblastula transition (MBT). The peak calls and the log likelihood ratio evidence tracks were produced by MACS. Credits The datasets were retrieved from the Gene Expression Omnibus database at NCBI under the accession number GSE41700. Chen K, Johnston J, Shao W, Meier S, Staber C, Zeitlinger J. A global change in RNA polymerase II pausing during the Drosophila midblastula transition. Elife. 2013 Aug 13;2:e00861.

Description