Schema for ChIP-Seq MBT Embryos - ChIP-Seq of Embryos Under Midblastula Transition

Database: dm6 Primary Table: GSE41700_PolII_MBT_2_macs Row Count: 9,665 Data last updated: 2022-10-20

field	example	SQL type	info
`bin`	585	`smallint(5) unsigned`	range
`chrom`	chr2L	`varchar(255)`	values
`chromStart`	18309	`int(10) unsigned`	range
`chromEnd`	18618	`int(10) unsigned`	range
`name`	GSE41700_PolII_MBT_rep2_peak_1	`varchar(255)`	values
`score`	271	`int(10) unsigned`	range
`strand`	.	`char(1)`	values
`signalValue`	6.31049	`float`	range
`pValue`	29.7605	`float`	range
`qValue`	27.1082	`float`	range
`peak`	141	`int(11)`	range

Sample Rows

bin	chrom	chromStart	chromEnd	name	score	strand	signalValue	pValue	qValue	peak
585	chr2L	18309	18618	GSE41700_PolII_MBT_rep2_peak_1	271	.	6.31049	29.7605	27.1082	141
585	chr2L	20875	21074	GSE41700_PolII_MBT_rep2_peak_2	47	.	2.74735	6.83902	4.70419	68
585	chr2L	21138	21457	GSE41700_PolII_MBT_rep2_peak_3	239	.	5.81992	26.5372	23.9393	169
585	chr2L	27233	27576	GSE41700_PolII_MBT_rep2_peak_4	89	.	3.16416	11.2162	8.90504	160
585	chr2L	27920	28046	GSE41700_PolII_MBT_rep2_peak_5	32	.	2.52324	5.28115	3.24646	76
585	chr2L	67050	67143	GSE41700_PolII_MBT_rep2_peak_6	61	.	3.05728	8.34494	6.14122	40
585	chr2L	87224	87444	GSE41700_PolII_MBT_rep2_peak_7	403	.	7.87331	43.2404	40.3139	110
585	chr2L	107967	108259	GSE41700_PolII_MBT_rep2_peak_8a	65	.	3.3102	8.82145	6.59951	78
585	chr2L	107967	108259	GSE41700_PolII_MBT_rep2_peak_8b	105	.	3.65233	12.9479	10.583	237
586	chr2L	155180	155280	GSE41700_PolII_MBT_rep2_peak_9	37	.	2.69403	5.83445	3.76107	65

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

ChIP-Seq MBT Embryos (MBTChIPSeq) Track Description


	Description These tracks show the results of the ChIP-Seq analyses of histone modifications, RNA Polymerase II, and TATA-binding protein (TBP) for Drosophila embryos during the midblastula transition (MBT). The peak calls and the log likelihood ratio evidence tracks were produced by MACS. Credits The datasets were retrieved from the Gene Expression Omnibus database at NCBI under the accession number GSE41700. Chen K, Johnston J, Shao W, Meier S, Staber C, Zeitlinger J. A global change in RNA polymerase II pausing during the Drosophila midblastula transition. Elife. 2013 Aug 13;2:e00861.

Description