Schema for ChIP-Seq MBT Embryos - ChIP-Seq of Embryos Under Midblastula Transition

Database: dm6 Primary Table: GSE41700_PolII_MBT_3_macs Row Count: 23,579 Data last updated: 2022-10-20

field	example	SQL type	info
`bin`	585	`smallint(5) unsigned`	range
`chrom`	chr2L	`varchar(255)`	values
`chromStart`	5513	`int(10) unsigned`	range
`chromEnd`	5994	`int(10) unsigned`	range
`name`	GSE41700_PolII_MBT_rep3_pea...	`varchar(255)`	values
`score`	46	`int(10) unsigned`	range
`strand`	.	`char(1)`	values
`signalValue`	2.55877	`float`	range
`pValue`	6.28479	`float`	range
`qValue`	4.68495	`float`	range
`peak`	98	`int(11)`	range

Sample Rows

bin	chrom	chromStart	chromEnd	name	score	strand	signalValue	pValue	qValue	peak
585	chr2L	5513	5994	GSE41700_PolII_MBT_rep3_peak_1a	46	.	2.55877	6.28479	4.68495	98
585	chr2L	5513	5994	GSE41700_PolII_MBT_rep3_peak_1b	104	.	3.94655	12.2434	10.4247	310
585	chr2L	6535	6848	GSE41700_PolII_MBT_rep3_peak_2	71	.	3.26574	8.88694	7.17009	156
585	chr2L	7073	7212	GSE41700_PolII_MBT_rep3_peak_3	42	.	2.75793	5.87007	4.28925	77
585	chr2L	7446	9472	GSE41700_PolII_MBT_rep3_peak_4a	129	.	4.35196	14.8389	12.9567	95
585	chr2L	7446	9472	GSE41700_PolII_MBT_rep3_peak_4b	187	.	4.69943	20.7043	18.7076	415
585	chr2L	7446	9472	GSE41700_PolII_MBT_rep3_peak_4c	163	.	4.76961	18.3172	16.3634	818
585	chr2L	7446	9472	GSE41700_PolII_MBT_rep3_peak_4d	139	.	4.45139	15.8207	13.916	1057
585	chr2L	7446	9472	GSE41700_PolII_MBT_rep3_peak_4e	195	.	5.15757	21.5798	19.5684	1372
585	chr2L	7446	9472	GSE41700_PolII_MBT_rep3_peak_4f	89	.	3.28742	10.7066	8.92981	1674

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

ChIP-Seq MBT Embryos (MBTChIPSeq) Track Description


	Description These tracks show the results of the ChIP-Seq analyses of histone modifications, RNA Polymerase II, and TATA-binding protein (TBP) for Drosophila embryos during the midblastula transition (MBT). The peak calls and the log likelihood ratio evidence tracks were produced by MACS. Credits The datasets were retrieved from the Gene Expression Omnibus database at NCBI under the accession number GSE41700. Chen K, Johnston J, Shao W, Meier S, Staber C, Zeitlinger J. A global change in RNA polymerase II pausing during the Drosophila midblastula transition. Elife. 2013 Aug 13;2:e00861.

Description