Schema for ChIP-Seq MBT Embryos - ChIP-Seq of Embryos Under Midblastula Transition

Database: dm6 Primary Table: GSE41700_TBP_MBT_1_macs Row Count: 6,142 Data last updated: 2022-10-20

field	example	SQL type	info
`bin`	585	`smallint(5) unsigned`	range
`chrom`	chr2L	`varchar(255)`	values
`chromStart`	18326	`int(10) unsigned`	range
`chromEnd`	18672	`int(10) unsigned`	range
`name`	GSE41700_TBP_MBT_rep1_peak_1a	`varchar(255)`	values
`score`	64	`int(10) unsigned`	range
`strand`	.	`char(1)`	values
`signalValue`	3.95612	`float`	range
`pValue`	8.98266	`float`	range
`qValue`	6.41444	`float`	range
`peak`	66	`int(11)`	range

Sample Rows

bin	chrom	chromStart	chromEnd	name	score	strand	signalValue	pValue	qValue	peak
585	chr2L	18326	18672	GSE41700_TBP_MBT_rep1_peak_1a	64	.	3.95612	8.98266	6.41444	66
585	chr2L	18326	18672	GSE41700_TBP_MBT_rep1_peak_1b	124	.	5.42271	15.3898	12.4397	225
585	chr2L	21231	21493	GSE41700_TBP_MBT_rep1_peak_2	112	.	5.08269	14.1222	11.2216	113
585	chr2L	87430	87504	GSE41700_TBP_MBT_rep1_peak_3	41	.	3.35626	6.51668	4.15693	54
586	chr2L	158786	159190	GSE41700_TBP_MBT_rep1_peak_4a	75	.	4.32173	10.1847	7.52058	120
586	chr2L	158786	159190	GSE41700_TBP_MBT_rep1_peak_4b	195	.	6.91477	22.7417	19.5516	253
586	chr2L	221850	222038	GSE41700_TBP_MBT_rep1_peak_5	32	.	2.74942	5.50967	3.23815	61
586	chr2L	249096	249283	GSE41700_TBP_MBT_rep1_peak_6	76	.	4.26291	10.3352	7.66011	144
586	chr2L	250717	251017	GSE41700_TBP_MBT_rep1_peak_7a	85	.	4.51997	11.3028	8.56126	69
586	chr2L	250717	251017	GSE41700_TBP_MBT_rep1_peak_7b	23	.	2.70039	4.55815	2.37297	243

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

ChIP-Seq MBT Embryos (MBTChIPSeq) Track Description


	Description These tracks show the results of the ChIP-Seq analyses of histone modifications, RNA Polymerase II, and TATA-binding protein (TBP) for Drosophila embryos during the midblastula transition (MBT). The peak calls and the log likelihood ratio evidence tracks were produced by MACS. Credits The datasets were retrieved from the Gene Expression Omnibus database at NCBI under the accession number GSE41700. Chen K, Johnston J, Shao W, Meier S, Staber C, Zeitlinger J. A global change in RNA polymerase II pausing during the Drosophila midblastula transition. Elife. 2013 Aug 13;2:e00861.

Description