Schema for ChIP-Seq MBT Embryos - ChIP-Seq of Embryos Under Midblastula Transition

Database: dm6 Primary Table: GSE41700_TBP_MBT_2_macs Row Count: 6,166 Data last updated: 2022-10-20

field	example	SQL type	info
`bin`	585	`smallint(5) unsigned`	range
`chrom`	chr2L	`varchar(255)`	values
`chromStart`	18335	`int(10) unsigned`	range
`chromEnd`	18670	`int(10) unsigned`	range
`name`	GSE41700_TBP_MBT_rep2_peak_1b	`varchar(255)`	values
`score`	191	`int(10) unsigned`	range
`strand`	.	`char(1)`	values
`signalValue`	6.76146	`float`	range
`pValue`	22.3273	`float`	range
`qValue`	19.1522	`float`	range
`peak`	188	`int(11)`	range

Sample Rows

bin	chrom	chromStart	chromEnd	name	score	strand	signalValue	pValue	qValue	peak
585	chr2L	18335	18670	GSE41700_TBP_MBT_rep2_peak_1b	191	.	6.76146	22.3273	19.1522	188
585	chr2L	18335	18670	GSE41700_TBP_MBT_rep2_peak_1a	34	.	3.168	5.85649	3.49355	38
585	chr2L	21226	21494	GSE41700_TBP_MBT_rep2_peak_2	183	.	6.61524	21.4771	18.3438	95
585	chr2L	87260	87447	GSE41700_TBP_MBT_rep2_peak_3	124	.	5.38274	15.2845	12.4094	112
586	chr2L	155991	156087	GSE41700_TBP_MBT_rep2_peak_4	32	.	3.12564	5.55514	3.22393	41
586	chr2L	158871	159154	GSE41700_TBP_MBT_rep2_peak_5	286	.	7.47642	32.1316	28.6036	205
586	chr2L	221850	222085	GSE41700_TBP_MBT_rep2_peak_6	97	.	4.19321	12.4993	9.73826	72
586	chr2L	222294	222388	GSE41700_TBP_MBT_rep2_peak_7	32	.	2.92432	5.63974	3.29411	44
586	chr2L	246633	246733	GSE41700_TBP_MBT_rep2_peak_8	22	.	2.71827	4.43817	2.24086	31
586	chr2L	249192	249436	GSE41700_TBP_MBT_rep2_peak_9	70	.	3.92893	9.72857	7.09493	117

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

ChIP-Seq MBT Embryos (MBTChIPSeq) Track Description


	Description These tracks show the results of the ChIP-Seq analyses of histone modifications, RNA Polymerase II, and TATA-binding protein (TBP) for Drosophila embryos during the midblastula transition (MBT). The peak calls and the log likelihood ratio evidence tracks were produced by MACS. Credits The datasets were retrieved from the Gene Expression Omnibus database at NCBI under the accession number GSE41700. Chen K, Johnston J, Shao W, Meier S, Staber C, Zeitlinger J. A global change in RNA polymerase II pausing during the Drosophila midblastula transition. Elife. 2013 Aug 13;2:e00861.

Description