Schema for modENCODE Histone Modifications (R5) - modENCODE ChIP-chip Data for Histone Modifications (R5)

Database: dm6 Primary Table: modENCODE_GSE20773_cluster Row Count: 7,453 Data last updated: 2022-10-21

field	example	SQL type	info
`bin`	585	`smallint(5) unsigned`	range
`chrom`	chr2L	`varchar(255)`	values
`chromStart`	7652	`int(10) unsigned`	range
`chromEnd`	9675	`int(10) unsigned`	range
`name`	GSE20773_enriched_3117	`varchar(255)`	values
`score`	103	`int(10) unsigned`	range
`strand`	+	`char(1)`	values
`signalValue`	1.03312	`float`	range
`pValue`	-1	`float`	range
`qValue`	-1	`float`	range

Sample Rows

bin	chrom	chromStart	chromEnd	name	score	strand	signalValue	pValue	qValue
585	chr2L	7652	9675	GSE20773_enriched_3117	103	+	1.03312	-1	-1
585	chr2L	9987	15816	GSE20773_enriched_3118	262	+	2.61775	-1	-1
585	chr2L	15945	18508	GSE20773_enriched_3119	175	+	1.75488	-1	-1
585	chr2L	19081	21313	GSE20773_enriched_3120	187	+	1.8657	-1	-1
585	chr2L	67466	70838	GSE20773_enriched_3121	144	+	1.43763	-1	-1
585	chr2L	74241	76959	GSE20773_enriched_3122	176	+	1.76247	-1	-1
585	chr2L	94723	100713	GSE20773_enriched_3123	191	+	1.9133	-1	-1
585	chr2L	102582	104337	GSE20773_enriched_3124	113	+	1.13498	-1	-1
585	chr2L	104452	106737	GSE20773_enriched_3125	110	+	1.09529	-1	-1
585	chr2L	109910	113786	GSE20773_enriched_3126	116	+	1.15617	-1	-1

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

modENCODE Histone Modifications (R5) (modENCODE_histones_ChIPchip) Track Description

modENCODE ChIP-chip Sample Details

Description

These tracks show the ChIP-chip enrichment profiles for different histone modifications in BG3, Kc167, and S2 cell lines that were produced by the modENCODE project. The replicate set (repset) datasets were obtained from the NCBI BioProject database under the accession number PRJNA63463, and from the modENCODE data portal. The results were lifted from the D. melanogaster Release 5 assembly over to the Release 6 assembly.

modENCODE ChIP-chip Datasets

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References

Kharchenko PV, Alekseyenko AA, Schwartz YB, Minoda A, Riddle NC, Ernst J, Sabo PJ, Larschan E, Gorchakov AA, Gu T, Linder-Basso D, Plachetka A, Shanower G, Tolstorukov MY, Luquette LJ, Xi R, Jung YL, Park RW, Bishop EP, Canfield TK, Sandstrom R, Thurman RE, MacAlpine DM, Stamatoyannopoulos JA, Kellis M, Elgin SC, Kuroda MI, Pirrotta V, Karpen GH, Park PJ. Comprehensive analysis of the chromatin landscape in Drosophila melanogaster. Nature. 2011 Mar 24;471(7339):480-5.