Schema for modENCODE Histone Modifications (R5) - modENCODE ChIP-chip Data for Histone Modifications (R5)

Database: dm6 Primary Table: modENCODE_GSE20776_cluster Row Count: 2,156 Data last updated: 2022-10-21

field	example	SQL type	info
`bin`	585	`smallint(5) unsigned`	range
`chrom`	chr2L	`varchar(255)`	values
`chromStart`	35421	`int(10) unsigned`	range
`chromEnd`	36800	`int(10) unsigned`	range
`name`	GSE20776_enriched_1206	`varchar(255)`	values
`score`	63	`int(10) unsigned`	range
`strand`	+	`char(1)`	values
`signalValue`	0.630592	`float`	range
`pValue`	-1	`float`	range
`qValue`	-1	`float`	range

Sample Rows

bin	chrom	chromStart	chromEnd	name	score	strand	signalValue	pValue	qValue
585	chr2L	35421	36800	GSE20776_enriched_1206	63	+	0.630592	-1	-1
585	chr2L	37109	38409	GSE20776_enriched_1207	109	+	1.09211	-1	-1
585	chr2L	68928	70606	GSE20776_enriched_1208	104	+	1.04405	-1	-1
585	chr2L	74621	75750	GSE20776_enriched_1209	95	+	0.954954	-1	-1
585	chr2L	110691	111877	GSE20776_enriched_1210	78	+	0.78046	-1	-1
585	chr2L	123653	126438	GSE20776_enriched_1211	113	+	1.12885	-1	-1
586	chr2L	139275	140551	GSE20776_enriched_1212	71	+	0.710822	-1	-1
586	chr2L	144830	147061	GSE20776_enriched_1213	107	+	1.0745	-1	-1
586	chr2L	147301	148750	GSE20776_enriched_1214	85	+	0.84786	-1	-1
586	chr2L	151643	152644	GSE20776_enriched_1215	111	+	1.10578	-1	-1

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

modENCODE Histone Modifications (R5) (modENCODE_histones_ChIPchip) Track Description

modENCODE ChIP-chip Sample Details

Description

These tracks show the ChIP-chip enrichment profiles for different histone modifications in BG3, Kc167, and S2 cell lines that were produced by the modENCODE project. The replicate set (repset) datasets were obtained from the NCBI BioProject database under the accession number PRJNA63463, and from the modENCODE data portal. The results were lifted from the D. melanogaster Release 5 assembly over to the Release 6 assembly.

modENCODE ChIP-chip Datasets

View in Google Sheets

References

Kharchenko PV, Alekseyenko AA, Schwartz YB, Minoda A, Riddle NC, Ernst J, Sabo PJ, Larschan E, Gorchakov AA, Gu T, Linder-Basso D, Plachetka A, Shanower G, Tolstorukov MY, Luquette LJ, Xi R, Jung YL, Park RW, Bishop EP, Canfield TK, Sandstrom R, Thurman RE, MacAlpine DM, Stamatoyannopoulos JA, Kellis M, Elgin SC, Kuroda MI, Pirrotta V, Karpen GH, Park PJ. Comprehensive analysis of the chromatin landscape in Drosophila melanogaster. Nature. 2011 Mar 24;471(7339):480-5.