Schema for modENCODE Histone Modifications (R5) - modENCODE ChIP-chip Data for Histone Modifications (R5)

Database: dm6 Primary Table: modENCODE_GSE20783_cluster Row Count: 6,079 Data last updated: 2022-10-21

field	example	SQL type	info
`bin`	585	`smallint(5) unsigned`	range
`chrom`	chr2L	`varchar(255)`	values
`chromStart`	7575	`int(10) unsigned`	range
`chromEnd`	9675	`int(10) unsigned`	range
`name`	GSE20783_enriched_2489	`varchar(255)`	values
`score`	176	`int(10) unsigned`	range
`strand`	+	`char(1)`	values
`signalValue`	1.76088	`float`	range
`pValue`	-1	`float`	range
`qValue`	-1	`float`	range

Sample Rows

bin	chrom	chromStart	chromEnd	name	score	strand	signalValue	pValue	qValue
585	chr2L	7575	9675	GSE20783_enriched_2489	176	+	1.76088	-1	-1
585	chr2L	9987	15816	GSE20783_enriched_2490	242	+	2.42157	-1	-1
585	chr2L	67766	71268	GSE20783_enriched_2491	251	+	2.50616	-1	-1
585	chr2L	74580	79418	GSE20783_enriched_2492	174	+	1.74047	-1	-1
585	chr2L	79701	82562	GSE20783_enriched_2493	89	+	0.894417	-1	-1
585	chr2L	83196	84255	GSE20783_enriched_2494	107	+	1.07499	-1	-1
585	chr2L	95003	101939	GSE20783_enriched_2495	287	+	2.87106	-1	-1
585	chr2L	102543	106661	GSE20783_enriched_2496	253	+	2.52534	-1	-1
585	chr2L	108515	114982	GSE20783_enriched_2497	221	+	2.21297	-1	-1
585	chr2L	115094	116497	GSE20783_enriched_2498	139	+	1.39238	-1	-1

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

modENCODE Histone Modifications (R5) (modENCODE_histones_ChIPchip) Track Description

modENCODE ChIP-chip Sample Details

Description

These tracks show the ChIP-chip enrichment profiles for different histone modifications in BG3, Kc167, and S2 cell lines that were produced by the modENCODE project. The replicate set (repset) datasets were obtained from the NCBI BioProject database under the accession number PRJNA63463, and from the modENCODE data portal. The results were lifted from the D. melanogaster Release 5 assembly over to the Release 6 assembly.

modENCODE ChIP-chip Datasets

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References

Kharchenko PV, Alekseyenko AA, Schwartz YB, Minoda A, Riddle NC, Ernst J, Sabo PJ, Larschan E, Gorchakov AA, Gu T, Linder-Basso D, Plachetka A, Shanower G, Tolstorukov MY, Luquette LJ, Xi R, Jung YL, Park RW, Bishop EP, Canfield TK, Sandstrom R, Thurman RE, MacAlpine DM, Stamatoyannopoulos JA, Kellis M, Elgin SC, Kuroda MI, Pirrotta V, Karpen GH, Park PJ. Comprehensive analysis of the chromatin landscape in Drosophila melanogaster. Nature. 2011 Mar 24;471(7339):480-5.