Schema for modENCODE Histone Modifications (R5) - modENCODE ChIP-chip Data for Histone Modifications (R5)

Database: dm6 Primary Table: modENCODE_GSE20790_cluster Row Count: 6,798 Data last updated: 2022-10-21

field	example	SQL type	info
`bin`	585	`smallint(5) unsigned`	range
`chrom`	chr2L	`varchar(255)`	values
`chromStart`	17186	`int(10) unsigned`	range
`chromEnd`	18651	`int(10) unsigned`	range
`name`	GSE20790_enriched_2929	`varchar(255)`	values
`score`	262	`int(10) unsigned`	range
`strand`	+	`char(1)`	values
`signalValue`	2.61731	`float`	range
`pValue`	-1	`float`	range
`qValue`	-1	`float`	range

Sample Rows

bin	chrom	chromStart	chromEnd	name	score	strand	signalValue	pValue	qValue
585	chr2L	17186	18651	GSE20790_enriched_2929	262	+	2.61731	-1	-1
585	chr2L	20073	21456	GSE20790_enriched_2930	262	+	2.61994	-1	-1
585	chr2L	66620	70684	GSE20790_enriched_2931	165	+	1.65097	-1	-1
585	chr2L	71386	75707	GSE20790_enriched_2932	280	+	2.7991	-1	-1
585	chr2L	84782	86391	GSE20790_enriched_2933	83	+	0.825534	-1	-1
585	chr2L	94439	95768	GSE20790_enriched_2934	269	+	2.68539	-1	-1
585	chr2L	102232	104140	GSE20790_enriched_2935	143	+	1.42518	-1	-1
585	chr2L	104491	106894	GSE20790_enriched_2936	248	+	2.47974	-1	-1
585	chr2L	107959	110372	GSE20790_enriched_2937	314	+	3.13826	-1	-1
585	chr2L	117947	122327	GSE20790_enriched_2938	283	+	2.82924	-1	-1

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

modENCODE Histone Modifications (R5) (modENCODE_histones_ChIPchip) Track Description

modENCODE ChIP-chip Sample Details

Description

These tracks show the ChIP-chip enrichment profiles for different histone modifications in BG3, Kc167, and S2 cell lines that were produced by the modENCODE project. The replicate set (repset) datasets were obtained from the NCBI BioProject database under the accession number PRJNA63463, and from the modENCODE data portal. The results were lifted from the D. melanogaster Release 5 assembly over to the Release 6 assembly.

modENCODE ChIP-chip Datasets

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References

Kharchenko PV, Alekseyenko AA, Schwartz YB, Minoda A, Riddle NC, Ernst J, Sabo PJ, Larschan E, Gorchakov AA, Gu T, Linder-Basso D, Plachetka A, Shanower G, Tolstorukov MY, Luquette LJ, Xi R, Jung YL, Park RW, Bishop EP, Canfield TK, Sandstrom R, Thurman RE, MacAlpine DM, Stamatoyannopoulos JA, Kellis M, Elgin SC, Kuroda MI, Pirrotta V, Karpen GH, Park PJ. Comprehensive analysis of the chromatin landscape in Drosophila melanogaster. Nature. 2011 Mar 24;471(7339):480-5.