Schema for modENCODE Histone Modifications (R5) - modENCODE ChIP-chip Data for Histone Modifications (R5)

Database: dm6 Primary Table: modENCODE_GSE20792_cluster Row Count: 3,952 Data last updated: 2022-10-21

field	example	SQL type	info
`bin`	585	`smallint(5) unsigned`	range
`chrom`	chr2L	`varchar(255)`	values
`chromStart`	21867	`int(10) unsigned`	range
`chromEnd`	24183	`int(10) unsigned`	range
`name`	GSE20792_enriched_966	`varchar(255)`	values
`score`	196	`int(10) unsigned`	range
`strand`	+	`char(1)`	values
`signalValue`	1.96178	`float`	range
`pValue`	-1	`float`	range
`qValue`	-1	`float`	range

Sample Rows

bin	chrom	chromStart	chromEnd	name	score	strand	signalValue	pValue	qValue
585	chr2L	21867	24183	GSE20792_enriched_966	196	+	1.96178	-1	-1
585	chr2L	24498	27496	GSE20792_enriched_967	205	+	2.05411	-1	-1
585	chr2L	27801	29537	GSE20792_enriched_968	167	+	1.67266	-1	-1
585	chr2L	29736	34952	GSE20792_enriched_969	167	+	1.66779	-1	-1
585	chr2L	37226	38253	GSE20792_enriched_970	119	+	1.18758	-1	-1
586	chr2L	144677	149145	GSE20792_enriched_971	137	+	1.36763	-1	-1
586	chr2L	150970	152644	GSE20792_enriched_972	130	+	1.29513	-1	-1
586	chr2L	188030	189474	GSE20792_enriched_973	81	+	0.811266	-1	-1
586	chr2L	252850	253919	GSE20792_enriched_974	130	+	1.30024	-1	-1
586	chr2L	254032	255476	GSE20792_enriched_975	128	+	1.27667	-1	-1

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

modENCODE Histone Modifications (R5) (modENCODE_histones_ChIPchip) Track Description

modENCODE ChIP-chip Sample Details

Description

These tracks show the ChIP-chip enrichment profiles for different histone modifications in BG3, Kc167, and S2 cell lines that were produced by the modENCODE project. The replicate set (repset) datasets were obtained from the NCBI BioProject database under the accession number PRJNA63463, and from the modENCODE data portal. The results were lifted from the D. melanogaster Release 5 assembly over to the Release 6 assembly.

modENCODE ChIP-chip Datasets

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References

Kharchenko PV, Alekseyenko AA, Schwartz YB, Minoda A, Riddle NC, Ernst J, Sabo PJ, Larschan E, Gorchakov AA, Gu T, Linder-Basso D, Plachetka A, Shanower G, Tolstorukov MY, Luquette LJ, Xi R, Jung YL, Park RW, Bishop EP, Canfield TK, Sandstrom R, Thurman RE, MacAlpine DM, Stamatoyannopoulos JA, Kellis M, Elgin SC, Kuroda MI, Pirrotta V, Karpen GH, Park PJ. Comprehensive analysis of the chromatin landscape in Drosophila melanogaster. Nature. 2011 Mar 24;471(7339):480-5.