Schema for modENCODE Histone Modifications (R5) - modENCODE ChIP-chip Data for Histone Modifications (R5)

Database: dm6 Primary Table: modENCODE_GSE20821_cluster Row Count: 2,693 Data last updated: 2022-10-21

field	example	SQL type	info
`bin`	585	`smallint(5) unsigned`	range
`chrom`	chr2L	`varchar(255)`	values
`chromStart`	12886	`int(10) unsigned`	range
`chromEnd`	14712	`int(10) unsigned`	range
`name`	GSE20821_enriched_730	`varchar(255)`	values
`score`	46	`int(10) unsigned`	range
`strand`	+	`char(1)`	values
`signalValue`	0.462707	`float`	range
`pValue`	-1	`float`	range
`qValue`	-1	`float`	range

Sample Rows

bin	chrom	chromStart	chromEnd	name	score	strand	signalValue	pValue	qValue
585	chr2L	12886	14712	GSE20821_enriched_730	46	+	0.462707	-1	-1
585	chr2L	28385	29501	GSE20821_enriched_731	43	+	0.433497	-1	-1
585	chr2L	30295	31506	GSE20821_enriched_732	45	+	0.452436	-1	-1
585	chr2L	38334	39496	GSE20821_enriched_733	53	+	0.533244	-1	-1
585	chr2L	43210	44472	GSE20821_enriched_734	40	+	0.39876	-1	-1
585	chr2L	45884	47467	GSE20821_enriched_735	42	+	0.424195	-1	-1
585	chr2L	52897	54387	GSE20821_enriched_736	49	+	0.486323	-1	-1
585	chr2L	106773	107840	GSE20821_enriched_737	63	+	0.630212	-1	-1
587	chr2L	283927	285432	GSE20821_enriched_738	52	+	0.519323	-1	-1
587	chr2L	342534	345914	GSE20821_enriched_739	60	+	0.598333	-1	-1

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

modENCODE Histone Modifications (R5) (modENCODE_histones_ChIPchip) Track Description

modENCODE ChIP-chip Sample Details

Description

These tracks show the ChIP-chip enrichment profiles for different histone modifications in BG3, Kc167, and S2 cell lines that were produced by the modENCODE project. The replicate set (repset) datasets were obtained from the NCBI BioProject database under the accession number PRJNA63463, and from the modENCODE data portal. The results were lifted from the D. melanogaster Release 5 assembly over to the Release 6 assembly.

modENCODE ChIP-chip Datasets

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References

Kharchenko PV, Alekseyenko AA, Schwartz YB, Minoda A, Riddle NC, Ernst J, Sabo PJ, Larschan E, Gorchakov AA, Gu T, Linder-Basso D, Plachetka A, Shanower G, Tolstorukov MY, Luquette LJ, Xi R, Jung YL, Park RW, Bishop EP, Canfield TK, Sandstrom R, Thurman RE, MacAlpine DM, Stamatoyannopoulos JA, Kellis M, Elgin SC, Kuroda MI, Pirrotta V, Karpen GH, Park PJ. Comprehensive analysis of the chromatin landscape in Drosophila melanogaster. Nature. 2011 Mar 24;471(7339):480-5.