Schema for modENCODE Histone Modifications (R5) - modENCODE ChIP-chip Data for Histone Modifications (R5)

Database: dm6 Primary Table: modENCODE_GSE27741_cluster Row Count: 4,242 Data last updated: 2022-10-21

field	example	SQL type	info
`bin`	585	`smallint(5) unsigned`	range
`chrom`	chr2L	`varchar(255)`	values
`chromStart`	22031	`int(10) unsigned`	range
`chromEnd`	24183	`int(10) unsigned`	range
`name`	GSE27741_enriched_952	`varchar(255)`	values
`score`	150	`int(10) unsigned`	range
`strand`	+	`char(1)`	values
`signalValue`	1.4974	`float`	range
`pValue`	-1	`float`	range
`qValue`	-1	`float`	range

Sample Rows

bin	chrom	chromStart	chromEnd	name	score	strand	signalValue	pValue	qValue
585	chr2L	22031	24183	GSE27741_enriched_952	150	+	1.4974	-1	-1
585	chr2L	25526	27423	GSE27741_enriched_953	151	+	1.50624	-1	-1
585	chr2L	27801	30457	GSE27741_enriched_954	120	+	1.19865	-1	-1
585	chr2L	30619	32868	GSE27741_enriched_955	115	+	1.15359	-1	-1
586	chr2L	151906	152949	GSE27741_enriched_956	69	+	0.693352	-1	-1
73	chr2L	253653	262519	GSE27741_enriched_957	178	+	1.7816	-1	-1
587	chr2L	262801	264545	GSE27741_enriched_958	160	+	1.59983	-1	-1
587	chr2L	264861	266161	GSE27741_enriched_959	132	+	1.32152	-1	-1
587	chr2L	266397	269488	GSE27741_enriched_960	132	+	1.31835	-1	-1
587	chr2L	307962	312560	GSE27741_enriched_961	150	+	1.4988	-1	-1

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

modENCODE Histone Modifications (R5) (modENCODE_histones_ChIPchip) Track Description

modENCODE ChIP-chip Sample Details

Description

These tracks show the ChIP-chip enrichment profiles for different histone modifications in BG3, Kc167, and S2 cell lines that were produced by the modENCODE project. The replicate set (repset) datasets were obtained from the NCBI BioProject database under the accession number PRJNA63463, and from the modENCODE data portal. The results were lifted from the D. melanogaster Release 5 assembly over to the Release 6 assembly.

modENCODE ChIP-chip Datasets

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References

Kharchenko PV, Alekseyenko AA, Schwartz YB, Minoda A, Riddle NC, Ernst J, Sabo PJ, Larschan E, Gorchakov AA, Gu T, Linder-Basso D, Plachetka A, Shanower G, Tolstorukov MY, Luquette LJ, Xi R, Jung YL, Park RW, Bishop EP, Canfield TK, Sandstrom R, Thurman RE, MacAlpine DM, Stamatoyannopoulos JA, Kellis M, Elgin SC, Kuroda MI, Pirrotta V, Karpen GH, Park PJ. Comprehensive analysis of the chromatin landscape in Drosophila melanogaster. Nature. 2011 Mar 24;471(7339):480-5.