Schema for modENCODE Histone Modifications (R5) - modENCODE ChIP-chip Data for Histone Modifications (R5)

Database: dm6 Primary Table: modENCODE_GSE27788_cluster Row Count: 1,772 Data last updated: 2022-10-21

field	example	SQL type	info
`bin`	73	`smallint(5) unsigned`	range
`chrom`	chr2L	`varchar(255)`	values
`chromStart`	129714	`int(10) unsigned`	range
`chromEnd`	131101	`int(10) unsigned`	range
`name`	GSE27788_enriched_914	`varchar(255)`	values
`score`	53	`int(10) unsigned`	range
`strand`	+	`char(1)`	values
`signalValue`	0.529436	`float`	range
`pValue`	-1	`float`	range
`qValue`	-1	`float`	range

Sample Rows

bin	chrom	chromStart	chromEnd	name	score	strand	signalValue	pValue	qValue
73	chr2L	129714	131101	GSE27788_enriched_914	53	+	0.529436	-1	-1
586	chr2L	140824	141995	GSE27788_enriched_915	68	+	0.675619	-1	-1
586	chr2L	145577	146706	GSE27788_enriched_916	50	+	0.497539	-1	-1
586	chr2L	150570	152496	GSE27788_enriched_917	80	+	0.799421	-1	-1
586	chr2L	190897	191955	GSE27788_enriched_918	54	+	0.541136	-1	-1
586	chr2L	236144	237913	GSE27788_enriched_919	70	+	0.70009	-1	-1
587	chr2L	287417	288637	GSE27788_enriched_920	42	+	0.419255	-1	-1
588	chr2L	428381	429516	GSE27788_enriched_921	61	+	0.609408	-1	-1
588	chr2L	433672	435259	GSE27788_enriched_922	73	+	0.732008	-1	-1
588	chr2L	460888	462107	GSE27788_enriched_923	69	+	0.686184	-1	-1

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

modENCODE Histone Modifications (R5) (modENCODE_histones_ChIPchip) Track Description

modENCODE ChIP-chip Sample Details

Description

These tracks show the ChIP-chip enrichment profiles for different histone modifications in BG3, Kc167, and S2 cell lines that were produced by the modENCODE project. The replicate set (repset) datasets were obtained from the NCBI BioProject database under the accession number PRJNA63463, and from the modENCODE data portal. The results were lifted from the D. melanogaster Release 5 assembly over to the Release 6 assembly.

modENCODE ChIP-chip Datasets

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References

Kharchenko PV, Alekseyenko AA, Schwartz YB, Minoda A, Riddle NC, Ernst J, Sabo PJ, Larschan E, Gorchakov AA, Gu T, Linder-Basso D, Plachetka A, Shanower G, Tolstorukov MY, Luquette LJ, Xi R, Jung YL, Park RW, Bishop EP, Canfield TK, Sandstrom R, Thurman RE, MacAlpine DM, Stamatoyannopoulos JA, Kellis M, Elgin SC, Kuroda MI, Pirrotta V, Karpen GH, Park PJ. Comprehensive analysis of the chromatin landscape in Drosophila melanogaster. Nature. 2011 Mar 24;471(7339):480-5.