Schema for modENCODE Histone Modifications (R5) - modENCODE ChIP-chip Data for Histone Modifications (R5)

Database: dm6 Primary Table: modENCODE_GSE32771_cluster Row Count: 3,812 Data last updated: 2022-10-21

field	example	SQL type	info
`bin`	585	`smallint(5) unsigned`	range
`chrom`	chr2L	`varchar(255)`	values
`chromStart`	30379	`int(10) unsigned`	range
`chromEnd`	32868	`int(10) unsigned`	range
`name`	GSE32771_enriched_2030	`varchar(255)`	values
`score`	135	`int(10) unsigned`	range
`strand`	+	`char(1)`	values
`signalValue`	1.34741	`float`	range
`pValue`	-1	`float`	range
`qValue`	-1	`float`	range

Sample Rows

bin	chrom	chromStart	chromEnd	name	score	strand	signalValue	pValue	qValue
585	chr2L	30379	32868	GSE32771_enriched_2030	135	+	1.34741	-1	-1
585	chr2L	35836	38676	GSE32771_enriched_2031	186	+	1.86051	-1	-1
585	chr2L	83359	84419	GSE32771_enriched_2032	196	+	1.96176	-1	-1
586	chr2L	145180	146360	GSE32771_enriched_2033	158	+	1.57895	-1	-1
586	chr2L	151206	152723	GSE32771_enriched_2034	158	+	1.57815	-1	-1
586	chr2L	185602	186939	GSE32771_enriched_2035	98	+	0.978924	-1	-1
586	chr2L	187559	190017	GSE32771_enriched_2036	166	+	1.66079	-1	-1
586	chr2L	198510	199629	GSE32771_enriched_2037	186	+	1.86437	-1	-1
586	chr2L	212149	213256	GSE32771_enriched_2038	117	+	1.17386	-1	-1
586	chr2L	256255	257439	GSE32771_enriched_2039	126	+	1.26131	-1	-1

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

modENCODE Histone Modifications (R5) (modENCODE_histones_ChIPchip) Track Description

modENCODE ChIP-chip Sample Details

Description

These tracks show the ChIP-chip enrichment profiles for different histone modifications in BG3, Kc167, and S2 cell lines that were produced by the modENCODE project. The replicate set (repset) datasets were obtained from the NCBI BioProject database under the accession number PRJNA63463, and from the modENCODE data portal. The results were lifted from the D. melanogaster Release 5 assembly over to the Release 6 assembly.

modENCODE ChIP-chip Datasets

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References

Kharchenko PV, Alekseyenko AA, Schwartz YB, Minoda A, Riddle NC, Ernst J, Sabo PJ, Larschan E, Gorchakov AA, Gu T, Linder-Basso D, Plachetka A, Shanower G, Tolstorukov MY, Luquette LJ, Xi R, Jung YL, Park RW, Bishop EP, Canfield TK, Sandstrom R, Thurman RE, MacAlpine DM, Stamatoyannopoulos JA, Kellis M, Elgin SC, Kuroda MI, Pirrotta V, Karpen GH, Park PJ. Comprehensive analysis of the chromatin landscape in Drosophila melanogaster. Nature. 2011 Mar 24;471(7339):480-5.