Schema for modENCODE Histone Modifications (R5) - modENCODE ChIP-chip Data for Histone Modifications (R5)

Database: dm6 Primary Table: modENCODE_GSE44518_cluster Row Count: 1,344 Data last updated: 2022-10-21

field	example	SQL type	info
`bin`	586	`smallint(5) unsigned`	range
`chrom`	chr2L	`varchar(255)`	values
`chromStart`	196634	`int(10) unsigned`	range
`chromEnd`	197837	`int(10) unsigned`	range
`name`	GSE44518_enriched_623	`varchar(255)`	values
`score`	61	`int(10) unsigned`	range
`strand`	+	`char(1)`	values
`signalValue`	0.613011	`float`	range
`pValue`	-1	`float`	range
`qValue`	-1	`float`	range

Sample Rows

bin	chrom	chromStart	chromEnd	name	score	strand	signalValue	pValue	qValue
586	chr2L	196634	197837	GSE44518_enriched_623	61	+	0.613011	-1	-1
586	chr2L	235521	237830	GSE44518_enriched_624	76	+	0.756299	-1	-1
587	chr2L	366913	367977	GSE44518_enriched_625	77	+	0.769138	-1	-1
588	chr2L	406073	407319	GSE44518_enriched_626	57	+	0.573897	-1	-1
589	chr2L	595394	597078	GSE44518_enriched_627	69	+	0.689456	-1	-1
589	chr2L	646946	647999	GSE44518_enriched_628	58	+	0.575235	-1	-1
589	chr2L	648886	649951	GSE44518_enriched_629	63	+	0.62583	-1	-1
590	chr2L	667558	668595	GSE44518_enriched_630	59	+	0.58947	-1	-1
590	chr2L	677044	678265	GSE44518_enriched_631	100	+	0.997839	-1	-1
590	chr2L	678493	679604	GSE44518_enriched_632	83	+	0.8324	-1	-1

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

modENCODE Histone Modifications (R5) (modENCODE_histones_ChIPchip) Track Description

modENCODE ChIP-chip Sample Details

Description

These tracks show the ChIP-chip enrichment profiles for different histone modifications in BG3, Kc167, and S2 cell lines that were produced by the modENCODE project. The replicate set (repset) datasets were obtained from the NCBI BioProject database under the accession number PRJNA63463, and from the modENCODE data portal. The results were lifted from the D. melanogaster Release 5 assembly over to the Release 6 assembly.

modENCODE ChIP-chip Datasets

View in Google Sheets

References

Kharchenko PV, Alekseyenko AA, Schwartz YB, Minoda A, Riddle NC, Ernst J, Sabo PJ, Larschan E, Gorchakov AA, Gu T, Linder-Basso D, Plachetka A, Shanower G, Tolstorukov MY, Luquette LJ, Xi R, Jung YL, Park RW, Bishop EP, Canfield TK, Sandstrom R, Thurman RE, MacAlpine DM, Stamatoyannopoulos JA, Kellis M, Elgin SC, Kuroda MI, Pirrotta V, Karpen GH, Park PJ. Comprehensive analysis of the chromatin landscape in Drosophila melanogaster. Nature. 2011 Mar 24;471(7339):480-5.