Schema for modENCODE Histone Modifications (R5) - modENCODE ChIP-chip Data for Histone Modifications (R5)

Database: dm6 Primary Table: modENCODE_GSE45063_cluster Row Count: 5,835 Data last updated: 2022-10-21

field	example	SQL type	info
`bin`	585	`smallint(5) unsigned`	range
`chrom`	chr2L	`varchar(255)`	values
`chromStart`	59050	`int(10) unsigned`	range
`chromEnd`	60194	`int(10) unsigned`	range
`name`	GSE45063_enriched_2509	`varchar(255)`	values
`score`	167	`int(10) unsigned`	range
`strand`	+	`char(1)`	values
`signalValue`	1.66636	`float`	range
`pValue`	-1	`float`	range
`qValue`	-1	`float`	range

Sample Rows

bin	chrom	chromStart	chromEnd	name	score	strand	signalValue	pValue	qValue
585	chr2L	59050	60194	GSE45063_enriched_2509	167	+	1.66636	-1	-1
585	chr2L	65639	71268	GSE45063_enriched_2510	271	+	2.71499	-1	-1
585	chr2L	71386	76216	GSE45063_enriched_2511	245	+	2.44906	-1	-1
585	chr2L	85170	86581	GSE45063_enriched_2512	105	+	1.04538	-1	-1
585	chr2L	94757	96627	GSE45063_enriched_2513	276	+	2.76378	-1	-1
585	chr2L	102232	111545	GSE45063_enriched_2514	337	+	3.37458	-1	-1
585	chr2L	117683	122395	GSE45063_enriched_2515	322	+	3.21662	-1	-1
585	chr2L	123653	130620	GSE45063_enriched_2516	306	+	3.06335	-1	-1
586	chr2L	131794	135691	GSE45063_enriched_2517	281	+	2.81004	-1	-1
586	chr2L	140864	145103	GSE45063_enriched_2518	286	+	2.85844	-1	-1

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

modENCODE Histone Modifications (R5) (modENCODE_histones_ChIPchip) Track Description

modENCODE ChIP-chip Sample Details

Description

These tracks show the ChIP-chip enrichment profiles for different histone modifications in BG3, Kc167, and S2 cell lines that were produced by the modENCODE project. The replicate set (repset) datasets were obtained from the NCBI BioProject database under the accession number PRJNA63463, and from the modENCODE data portal. The results were lifted from the D. melanogaster Release 5 assembly over to the Release 6 assembly.

modENCODE ChIP-chip Datasets

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References

Kharchenko PV, Alekseyenko AA, Schwartz YB, Minoda A, Riddle NC, Ernst J, Sabo PJ, Larschan E, Gorchakov AA, Gu T, Linder-Basso D, Plachetka A, Shanower G, Tolstorukov MY, Luquette LJ, Xi R, Jung YL, Park RW, Bishop EP, Canfield TK, Sandstrom R, Thurman RE, MacAlpine DM, Stamatoyannopoulos JA, Kellis M, Elgin SC, Kuroda MI, Pirrotta V, Karpen GH, Park PJ. Comprehensive analysis of the chromatin landscape in Drosophila melanogaster. Nature. 2011 Mar 24;471(7339):480-5.