Schema for modENCODE Histone Modifications (R5) - modENCODE ChIP-chip Data for Histone Modifications (R5)

Database: dm6 Primary Table: modENCODE_GSE45083_cluster Row Count: 6,676 Data last updated: 2022-10-21

field	example	SQL type	info
`bin`	585	`smallint(5) unsigned`	range
`chrom`	chr2L	`varchar(255)`	values
`chromStart`	90558	`int(10) unsigned`	range
`chromEnd`	92558	`int(10) unsigned`	range
`name`	GSE45083_enriched_2976	`varchar(255)`	values
`score`	131	`int(10) unsigned`	range
`strand`	+	`char(1)`	values
`signalValue`	1.31167	`float`	range
`pValue`	-1	`float`	range
`qValue`	-1	`float`	range

Sample Rows

bin	chrom	chromStart	chromEnd	name	score	strand	signalValue	pValue	qValue
585	chr2L	90558	92558	GSE45083_enriched_2976	131	+	1.31167	-1	-1
586	chr2L	146282	150103	GSE45083_enriched_2977	109	+	1.0852	-1	-1
586	chr2L	150970	152759	GSE45083_enriched_2978	83	+	0.83336	-1	-1
586	chr2L	213147	215105	GSE45083_enriched_2979	102	+	1.02198	-1	-1
586	chr2L	256338	258996	GSE45083_enriched_2980	107	+	1.06562	-1	-1
587	chr2L	263455	266473	GSE45083_enriched_2981	157	+	1.57103	-1	-1
587	chr2L	287262	288982	GSE45083_enriched_2982	103	+	1.02799	-1	-1
587	chr2L	308974	310597	GSE45083_enriched_2983	71	+	0.712948	-1	-1
587	chr2L	310866	312083	GSE45083_enriched_2984	100	+	0.995141	-1	-1
587	chr2L	320477	321775	GSE45083_enriched_2985	98	+	0.975696	-1	-1

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

modENCODE Histone Modifications (R5) (modENCODE_histones_ChIPchip) Track Description

modENCODE ChIP-chip Sample Details

Description

These tracks show the ChIP-chip enrichment profiles for different histone modifications in BG3, Kc167, and S2 cell lines that were produced by the modENCODE project. The replicate set (repset) datasets were obtained from the NCBI BioProject database under the accession number PRJNA63463, and from the modENCODE data portal. The results were lifted from the D. melanogaster Release 5 assembly over to the Release 6 assembly.

modENCODE ChIP-chip Datasets

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References

Kharchenko PV, Alekseyenko AA, Schwartz YB, Minoda A, Riddle NC, Ernst J, Sabo PJ, Larschan E, Gorchakov AA, Gu T, Linder-Basso D, Plachetka A, Shanower G, Tolstorukov MY, Luquette LJ, Xi R, Jung YL, Park RW, Bishop EP, Canfield TK, Sandstrom R, Thurman RE, MacAlpine DM, Stamatoyannopoulos JA, Kellis M, Elgin SC, Kuroda MI, Pirrotta V, Karpen GH, Park PJ. Comprehensive analysis of the chromatin landscape in Drosophila melanogaster. Nature. 2011 Mar 24;471(7339):480-5.