Schema for modENCODE Histone Modifications (R5) - modENCODE ChIP-chip Data for Histone Modifications (R5)

Database: dm6 Primary Table: modENCODE_GSE51965_cluster Row Count: 5,822 Data last updated: 2022-10-21

field	example	SQL type	info
`bin`	585	`smallint(5) unsigned`	range
`chrom`	chr2L	`varchar(255)`	values
`chromStart`	13433	`int(10) unsigned`	range
`chromEnd`	15816	`int(10) unsigned`	range
`name`	GSE51965_enriched_2699	`varchar(255)`	values
`score`	125	`int(10) unsigned`	range
`strand`	+	`char(1)`	values
`signalValue`	1.25404	`float`	range
`pValue`	-1	`float`	range
`qValue`	-1	`float`	range

Sample Rows

bin	chrom	chromStart	chromEnd	name	score	strand	signalValue	pValue	qValue
585	chr2L	13433	15816	GSE51965_enriched_2699	125	+	1.25404	-1	-1
585	chr2L	68035	69323	GSE51965_enriched_2700	79	+	0.787849	-1	-1
585	chr2L	75866	77492	GSE51965_enriched_2701	108	+	1.07931	-1	-1
585	chr2L	79701	81615	GSE51965_enriched_2702	131	+	1.3143	-1	-1
585	chr2L	83035	84783	GSE51965_enriched_2703	122	+	1.21973	-1	-1
585	chr2L	109511	111545	GSE51965_enriched_2704	84	+	0.839807	-1	-1
585	chr2L	124463	127781	GSE51965_enriched_2705	184	+	1.84196	-1	-1
585	chr2L	129953	131029	GSE51965_enriched_2706	142	+	1.42054	-1	-1
586	chr2L	132023	134766	GSE51965_enriched_2707	130	+	1.295	-1	-1
586	chr2L	134917	138380	GSE51965_enriched_2708	155	+	1.54799	-1	-1

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

modENCODE Histone Modifications (R5) (modENCODE_histones_ChIPchip) Track Description

modENCODE ChIP-chip Sample Details

Description

These tracks show the ChIP-chip enrichment profiles for different histone modifications in BG3, Kc167, and S2 cell lines that were produced by the modENCODE project. The replicate set (repset) datasets were obtained from the NCBI BioProject database under the accession number PRJNA63463, and from the modENCODE data portal. The results were lifted from the D. melanogaster Release 5 assembly over to the Release 6 assembly.

modENCODE ChIP-chip Datasets

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References

Kharchenko PV, Alekseyenko AA, Schwartz YB, Minoda A, Riddle NC, Ernst J, Sabo PJ, Larschan E, Gorchakov AA, Gu T, Linder-Basso D, Plachetka A, Shanower G, Tolstorukov MY, Luquette LJ, Xi R, Jung YL, Park RW, Bishop EP, Canfield TK, Sandstrom R, Thurman RE, MacAlpine DM, Stamatoyannopoulos JA, Kellis M, Elgin SC, Kuroda MI, Pirrotta V, Karpen GH, Park PJ. Comprehensive analysis of the chromatin landscape in Drosophila melanogaster. Nature. 2011 Mar 24;471(7339):480-5.