Schema for modENCODE Histone Modifications (R5) - modENCODE ChIP-chip Data for Histone Modifications (R5)

Database: dm6 Primary Table: modENCODE_GSE51967_cluster Row Count: 6,170 Data last updated: 2022-10-21

field	example	SQL type	info
`bin`	585	`smallint(5) unsigned`	range
`chrom`	chr2L	`varchar(255)`	values
`chromStart`	67466	`int(10) unsigned`	range
`chromEnd`	70144	`int(10) unsigned`	range
`name`	GSE51967_enriched_2687	`varchar(255)`	values
`score`	220	`int(10) unsigned`	range
`strand`	+	`char(1)`	values
`signalValue`	2.20008	`float`	range
`pValue`	-1	`float`	range
`qValue`	-1	`float`	range

Sample Rows

bin	chrom	chromStart	chromEnd	name	score	strand	signalValue	pValue	qValue
585	chr2L	67466	70144	GSE51967_enriched_2687	220	+	2.20008	-1	-1
585	chr2L	74199	76098	GSE51967_enriched_2688	204	+	2.03784	-1	-1
585	chr2L	94868	95967	GSE51967_enriched_2689	226	+	2.26302	-1	-1
585	chr2L	102305	107058	GSE51967_enriched_2690	289	+	2.89264	-1	-1
585	chr2L	108123	111545	GSE51967_enriched_2691	230	+	2.30369	-1	-1
585	chr2L	119383	120438	GSE51967_enriched_2692	133	+	1.3308	-1	-1
585	chr2L	123653	129184	GSE51967_enriched_2693	331	+	3.31136	-1	-1
586	chr2L	132062	133883	GSE51967_enriched_2694	146	+	1.45662	-1	-1
586	chr2L	143260	144482	GSE51967_enriched_2695	211	+	2.10646	-1	-1
586	chr2L	153882	158657	GSE51967_enriched_2696	329	+	3.28706	-1	-1

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

modENCODE Histone Modifications (R5) (modENCODE_histones_ChIPchip) Track Description

modENCODE ChIP-chip Sample Details

Description

These tracks show the ChIP-chip enrichment profiles for different histone modifications in BG3, Kc167, and S2 cell lines that were produced by the modENCODE project. The replicate set (repset) datasets were obtained from the NCBI BioProject database under the accession number PRJNA63463, and from the modENCODE data portal. The results were lifted from the D. melanogaster Release 5 assembly over to the Release 6 assembly.

modENCODE ChIP-chip Datasets

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References

Kharchenko PV, Alekseyenko AA, Schwartz YB, Minoda A, Riddle NC, Ernst J, Sabo PJ, Larschan E, Gorchakov AA, Gu T, Linder-Basso D, Plachetka A, Shanower G, Tolstorukov MY, Luquette LJ, Xi R, Jung YL, Park RW, Bishop EP, Canfield TK, Sandstrom R, Thurman RE, MacAlpine DM, Stamatoyannopoulos JA, Kellis M, Elgin SC, Kuroda MI, Pirrotta V, Karpen GH, Park PJ. Comprehensive analysis of the chromatin landscape in Drosophila melanogaster. Nature. 2011 Mar 24;471(7339):480-5.