Schema for modENCODE Histones ChIP-Seq - modENCODE Chromatin State Mapping Using ChIP-Seq

Database: dm6 Primary Table: L3_H3K4me2_macs Row Count: 64,430

field	example	SQL type	info
`bin`	585	`smallint(5) unsigned`	range
`chrom`	chr2L	`varchar(255)`	values
`chromStart`	0	`int(10) unsigned`	range
`chromEnd`	6896	`int(10) unsigned`	range
`name`	dm6_H3K4me2_peak_1a	`varchar(255)`	values
`score`	193	`int(10) unsigned`	range
`strand`	.	`char(1)`	values
`signalValue`	4.20665	`float`	range
`pValue`	20.8058	`float`	range
`qValue`	19.3619	`float`	range
`peak`	129	`int(11)`	range

Sample Rows

bin	chrom	chromEnd	name	score	strand	signalValue	pValue	qValue	peak
585	chr2L	6896	dm6_H3K4me2_peak_1a	193	.	4.20665	20.8058	19.3619	129
585	chr2L	6896	dm6_H3K4me2_peak_1b	281	.	4.50686	29.6954	28.1162	353
585	chr2L	6896	dm6_H3K4me2_peak_1c	262	.	4.15852	27.8244	26.2745	807
585	chr2L	6896	dm6_H3K4me2_peak_1d	373	.	5.11586	39.1095	37.3709	914
585	chr2L	6896	dm6_H3K4me2_peak_1e	251	.	4.48474	26.6982	25.1657	1081
585	chr2L	6896	dm6_H3K4me2_peak_1f	250	.	3.75362	26.5396	25.0097	1285
585	chr2L	6896	dm6_H3K4me2_peak_1g	239	.	4.43907	25.4754	23.9617	1486
585	chr2L	6896	dm6_H3K4me2_peak_1h	160	.	3.65365	17.4535	16.0603	1614
585	chr2L	6896	dm6_H3K4me2_peak_1i	186	.	3.38	20.1238	18.6897	1731
585	chr2L	6896	dm6_H3K4me2_peak_1j	216	.	3.44484	23.1641	21.685	1828

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

modENCODE Histones ChIP-Seq (modENCODE_histones_chipseq) Track Description


	Description This track shows the results of the ChIP-Seq analysis of multiple histone modifications at different developmental stages using MACS. The ChIP-Seq data were produced as part of the modENCODE project. Credits Zhang Y et al. Model-based analysis of ChIP-Seq (MACS). Genome Biol. 2008;9(9):R137. Ho JW et al. ChIP-chip versus ChIP-seq: lessons for experimental design and data analysis. BMC Genomics. 2011 Feb 28;12:134. The ChIP-Seq datasets are available at the NCBI GEO database under the accession number GSE16013.

Description