Schema for MUSIC PolII ChIP-Seq Peaks - modENCODE RNA Polymerase ChIP-Seq Peaks Identified by MUSIC
Database: dm6 Primary Table: punctate_MUSIC_E12_16_PolII Data last updated: 2016-07-11 Big Bed File: /gbdb/dm6/bbi/punctate_MUSIC_E12_16_PolII_ERs.bb Item Count: 4,985 Format description: BED6+3 Peaks of signal enrichment based on pooled, normalized (interpreted) data.
field
example
description
chrom
chr2L
Reference sequence chromosome or scaffold
chromStart
15680316
Start position in chromosome
chromEnd
15680510
End position in chromosome
name
punctate_MUSIC_E12-16_PolII_ERs_504
Name given to a region (preferably unique). Use . if no name is assigned.
score
18
Indicates how dark the peak will be displayed in the browser (0-1000)
strand
+
+ or - or . for unknown
signalValue
2
Measurement of average enrichment for the region
pValue
0.32088
Statistical significance of signal value (-log10). Set to -1 if not used.
qValue
0.18652
Statistical significance with multiple-test correction applied (FDR -log10). Set to -1 if not used.
Sample Rows
chrom
chromStart
chromEnd
name
score
strand
signalValue
pValue
qValue
chr2L
15680316
15680510
punctate_MUSIC_E12-16_PolII_ERs_504
18
+
2
0.32088
0.18652
chr2L
15683063
15683451
punctate_MUSIC_E12-16_PolII_ERs_505
78
+
6
0.84463
0.78716
chr2L
15718068
15718397
punctate_MUSIC_E12-16_PolII_ERs_506
69
+
4
0.76228
0.69557
chr2L
15721863
15723051
punctate_MUSIC_E12-16_PolII_ERs_507
30
+
1
0.42161
0.30430
chr2L
15762502
15762895
punctate_MUSIC_E12-16_PolII_ERs_508
180
+
5
1.82251
1.80880
chr2L
15908778
15909280
punctate_MUSIC_E12-16_PolII_ERs_509
27
+
5
0.39362
0.27170
chr2L
16049643
16050149
punctate_MUSIC_E12-16_PolII_ERs_510
90
+
7
0.95500
0.90804
chr2L
16159824
16159979
punctate_MUSIC_E12-16_PolII_ERs_511
26
+
4
0.38449
0.26103
chr2L
16165787
16166026
punctate_MUSIC_E12-16_PolII_ERs_512
84
+
6
0.89275
0.84002
chr2L
16214722
16214898
punctate_MUSIC_E12-16_PolII_ERs_513
18
+
4
0.32088
0.18666
MUSIC PolII ChIP-Seq Peaks (modENCODE_polII_MUSIC_peaks) Track Description
Description
These tracks show the regions in the genome that are significantly enriched in RNA Polymerase II
ChIP-Seq reads at different developmental stages as determined by
MUSIC.
The ChIP-Seq data were produced as part of the modENCODE project
and were obtained from the NCBI Sequence Reads Archive under the accession number
SRP001424.