Schema for MUSIC PolII ChIP-Seq Peaks - modENCODE RNA Polymerase ChIP-Seq Peaks Identified by MUSIC
Database: dm6 Primary Table: punctate_MUSIC_E16_20_PolII Data last updated: 2016-07-11 Big Bed File: /gbdb/dm6/bbi/punctate_MUSIC_E16_20_PolII_ERs.bb Item Count: 6,396 Format description: BED6+3 Peaks of signal enrichment based on pooled, normalized (interpreted) data.
field
example
description
chrom
chr2L
Reference sequence chromosome or scaffold
chromStart
15728874
Start position in chromosome
chromEnd
15732031
End position in chromosome
name
punctate_MUSIC_E16-20_PolII_ERs_711
Name given to a region (preferably unique). Use . if no name is assigned.
score
76
Indicates how dark the peak will be displayed in the browser (0-1000)
strand
+
+ or - or . for unknown
signalValue
3
Measurement of average enrichment for the region
pValue
0.82419
Statistical significance of signal value (-log10). Set to -1 if not used.
qValue
0.76767
Statistical significance with multiple-test correction applied (FDR -log10). Set to -1 if not used.
Sample Rows
chrom
chromStart
chromEnd
name
score
strand
signalValue
pValue
qValue
chr2L
15728874
15732031
punctate_MUSIC_E16-20_PolII_ERs_711
76
+
3
0.82419
0.76767
chr2L
15737620
15737939
punctate_MUSIC_E16-20_PolII_ERs_712
37
+
3
0.45231
0.37072
chr2L
15745806
15748123
punctate_MUSIC_E16-20_PolII_ERs_713
46
+
2
0.54217
0.46677
chr2L
15750589
15750854
punctate_MUSIC_E16-20_PolII_ERs_714
15
+
2
0.24451
0.15232
chr2L
15752448
15755481
punctate_MUSIC_E16-20_PolII_ERs_715
108
+
5
1.13032
1.08638
chr2L
15759511
15759907
punctate_MUSIC_E16-20_PolII_ERs_716
21
+
7
0.30181
0.21101
chr2L
15764355
15765437
punctate_MUSIC_E16-20_PolII_ERs_717
73
+
6
0.79142
0.73292
chr2L
15767211
15768164
punctate_MUSIC_E16-20_PolII_ERs_718
92
+
3
0.97378
0.92503
chr2L
15907418
15908376
punctate_MUSIC_E16-20_PolII_ERs_719
35
+
3
0.43986
0.35736
chr2L
15914565
15914805
punctate_MUSIC_E16-20_PolII_ERs_720
26
+
2
0.35654
0.26841
MUSIC PolII ChIP-Seq Peaks (modENCODE_polII_MUSIC_peaks) Track Description
Description
These tracks show the regions in the genome that are significantly enriched in RNA Polymerase II
ChIP-Seq reads at different developmental stages as determined by
MUSIC.
The ChIP-Seq data were produced as part of the modENCODE project
and were obtained from the NCBI Sequence Reads Archive under the accession number
SRP001424.