Schema for MUSIC PolII ChIP-Seq Peaks - modENCODE RNA Polymerase ChIP-Seq Peaks Identified by MUSIC
Database: dm6 Primary Table: punctate_MUSIC_E20_24_PolII Data last updated: 2016-07-11 Big Bed File: /gbdb/dm6/bbi/punctate_MUSIC_E20_24_PolII_ERs.bb Item Count: 847 Format description: BED6+3 Peaks of signal enrichment based on pooled, normalized (interpreted) data.
field
example
description
chrom
chr2L
Reference sequence chromosome or scaffold
chromStart
15762562
Start position in chromosome
chromEnd
15762850
End position in chromosome
name
punctate_MUSIC_E20-24_PolII_ERs_95
Name given to a region (preferably unique). Use . if no name is assigned.
score
52
Indicates how dark the peak will be displayed in the browser (0-1000)
strand
+
+ or - or . for unknown
signalValue
4
Measurement of average enrichment for the region
pValue
0.67010
Statistical significance of signal value (-log10). Set to -1 if not used.
qValue
0.52110
Statistical significance with multiple-test correction applied (FDR -log10). Set to -1 if not used.
Sample Rows
chrom
chromStart
chromEnd
name
score
strand
signalValue
pValue
qValue
chr2L
15762562
15762850
punctate_MUSIC_E20-24_PolII_ERs_95
52
+
4
0.67010
0.52110
chr2L
16287563
16287896
punctate_MUSIC_E20-24_PolII_ERs_96
41
+
5
0.57678
0.41721
chr2L
16881111
16881769
punctate_MUSIC_E20-24_PolII_ERs_97
45
+
5
0.61425
0.45781
chr2L
17383893
17384882
punctate_MUSIC_E20-24_PolII_ERs_98
35
+
4
0.52022
0.35281
chr2L
17389226
17389505
punctate_MUSIC_E20-24_PolII_ERs_99
55
+
31
0.70031
0.55473
chr2L
17843531
17843730
punctate_MUSIC_E20-24_PolII_ERs_100
24
+
41
0.42810
0.24565
chr2L
18152215
18152571
punctate_MUSIC_E20-24_PolII_ERs_101
104
+
21
1.14161
1.04651
chr2L
18320009
18320328
punctate_MUSIC_E20-24_PolII_ERs_102
25
+
5
0.43407
0.25343
chr2L
18572080
18572425
punctate_MUSIC_E20-24_PolII_ERs_103
46
+
6
0.61793
0.46211
chr2L
18859208
18859502
punctate_MUSIC_E20-24_PolII_ERs_104
105
+
7
1.15176
1.05239
MUSIC PolII ChIP-Seq Peaks (modENCODE_polII_MUSIC_peaks) Track Description
Description
These tracks show the regions in the genome that are significantly enriched in RNA Polymerase II
ChIP-Seq reads at different developmental stages as determined by
MUSIC.
The ChIP-Seq data were produced as part of the modENCODE project
and were obtained from the NCBI Sequence Reads Archive under the accession number
SRP001424.