Schema for MUSIC PolII ChIP-Seq Peaks - modENCODE RNA Polymerase ChIP-Seq Peaks Identified by MUSIC
Database: dm6 Primary Table: punctate_MUSIC_E4_8_PolII Data last updated: 2016-07-11 Big Bed File: /gbdb/dm6/bbi/punctate_MUSIC_E4_8_PolII_ERs.bb Item Count: 2,870 Format description: BED6+3 Peaks of signal enrichment based on pooled, normalized (interpreted) data.
field
example
description
chrom
chr2L
Reference sequence chromosome or scaffold
chromStart
15731604
Start position in chromosome
chromEnd
15731935
End position in chromosome
name
punctate_MUSIC_E4-8_PolII_ERs_267
Name given to a region (preferably unique). Use . if no name is assigned.
score
145
Indicates how dark the peak will be displayed in the browser (0-1000)
strand
+
+ or - or . for unknown
signalValue
7
Measurement of average enrichment for the region
pValue
1.47672
Statistical significance of signal value (-log10). Set to -1 if not used.
qValue
1.45686
Statistical significance with multiple-test correction applied (FDR -log10). Set to -1 if not used.
Sample Rows
chrom
chromStart
chromEnd
name
score
strand
signalValue
pValue
qValue
chr2L
15731604
15731935
punctate_MUSIC_E4-8_PolII_ERs_267
145
+
7
1.47672
1.45686
chr2L
15762511
15762866
punctate_MUSIC_E4-8_PolII_ERs_268
166
+
5
1.68026
1.66501
chr2L
15962331
15962518
punctate_MUSIC_E4-8_PolII_ERs_269
14
+
2
0.29508
0.14676
chr2L
16231341
16231675
punctate_MUSIC_E4-8_PolII_ERs_270
140
+
5
1.42758
1.40626
chr2L
16287505
16287844
punctate_MUSIC_E4-8_PolII_ERs_271
171
+
8
1.72801
1.71351
chr2L
16302791
16302878
punctate_MUSIC_E4-8_PolII_ERs_272
11
+
4
0.27325
0.11961
chr2L
16325373
16326268
punctate_MUSIC_E4-8_PolII_ERs_273
151
+
4
1.53247
1.51415
chr2L
16329818
16331002
punctate_MUSIC_E4-8_PolII_ERs_274
78
+
3
0.84319
0.78710
chr2L
16352491
16353309
punctate_MUSIC_E4-8_PolII_ERs_275
85
+
2
0.90143
0.85033
chr2L
16355224
16356734
punctate_MUSIC_E4-8_PolII_ERs_276
46
+
1
0.55455
0.46109
MUSIC PolII ChIP-Seq Peaks (modENCODE_polII_MUSIC_peaks) Track Description
Description
These tracks show the regions in the genome that are significantly enriched in RNA Polymerase II
ChIP-Seq reads at different developmental stages as determined by
MUSIC.
The ChIP-Seq data were produced as part of the modENCODE project
and were obtained from the NCBI Sequence Reads Archive under the accession number
SRP001424.