Schema for MUSIC PolII ChIP-Seq Peaks - modENCODE RNA Polymerase ChIP-Seq Peaks Identified by MUSIC
Database: dm6 Primary Table: punctate_MUSIC_E8_12_PolII Data last updated: 2016-07-11 Big Bed File: /gbdb/dm6/bbi/punctate_MUSIC_E8_12_PolII_ERs.bb Item Count: 1,058 Format description: BED6+3 Peaks of signal enrichment based on pooled, normalized (interpreted) data.
field
example
description
chrom
chr2L
Reference sequence chromosome or scaffold
chromStart
15687741
Start position in chromosome
chromEnd
15688191
End position in chromosome
name
punctate_MUSIC_E8-12_PolII_ERs_158
Name given to a region (preferably unique). Use . if no name is assigned.
score
34
Indicates how dark the peak will be displayed in the browser (0-1000)
strand
+
+ or - or . for unknown
signalValue
3
Measurement of average enrichment for the region
pValue
0.58044
Statistical significance of signal value (-log10). Set to -1 if not used.
qValue
0.34335
Statistical significance with multiple-test correction applied (FDR -log10). Set to -1 if not used.
Sample Rows
chrom
chromStart
chromEnd
name
score
strand
signalValue
pValue
qValue
chr2L
15687741
15688191
punctate_MUSIC_E8-12_PolII_ERs_158
34
+
3
0.58044
0.34335
chr2L
15722751
15723171
punctate_MUSIC_E8-12_PolII_ERs_159
36
+
2
0.59712
0.36425
chr2L
15729425
15732123
punctate_MUSIC_E8-12_PolII_ERs_160
38
+
1
0.61316
0.38368
chr2L
15752370
15755431
punctate_MUSIC_E8-12_PolII_ERs_161
47
+
1
0.69555
0.47855
chr2L
15757153
15765798
punctate_MUSIC_E8-12_PolII_ERs_162
37
+
1
0.60182
0.37014
chr2L
15766717
15771441
punctate_MUSIC_E8-12_PolII_ERs_163
11
+
1
0.38510
0.11799
chr2L
15772062
15772714
punctate_MUSIC_E8-12_PolII_ERs_164
37
+
2
0.60901
0.37858
chr2L
16350156
16353618
punctate_MUSIC_E8-12_PolII_ERs_165
40
+
1
0.63165
0.40655
chr2L
16355479
16356638
punctate_MUSIC_E8-12_PolII_ERs_166
16
+
2
0.43015
0.16903
chr2L
16472713
16473429
punctate_MUSIC_E8-12_PolII_ERs_167
15
+
2
0.41420
0.15026
MUSIC PolII ChIP-Seq Peaks (modENCODE_polII_MUSIC_peaks) Track Description
Description
These tracks show the regions in the genome that are significantly enriched in RNA Polymerase II
ChIP-Seq reads at different developmental stages as determined by
MUSIC.
The ChIP-Seq data were produced as part of the modENCODE project
and were obtained from the NCBI Sequence Reads Archive under the accession number
SRP001424.