Schema for MUSIC PolII ChIP-Seq Peaks - modENCODE RNA Polymerase ChIP-Seq Peaks Identified by MUSIC
Database: dm6 Primary Table: punctate_MUSIC_L1_PolII Data last updated: 2016-07-11 Big Bed File: /gbdb/dm6/bbi/punctate_MUSIC_L1_PolII_ERs.bb Item Count: 2,619 Format description: BED6+3 Peaks of signal enrichment based on pooled, normalized (interpreted) data.
field
example
description
chrom
chr2L
Reference sequence chromosome or scaffold
chromStart
15682419
Start position in chromosome
chromEnd
15684246
End position in chromosome
name
punctate_MUSIC_L1_PolII_ERs_342
Name given to a region (preferably unique). Use . if no name is assigned.
score
50
Indicates how dark the peak will be displayed in the browser (0-1000)
strand
+
+ or - or . for unknown
signalValue
3
Measurement of average enrichment for the region
pValue
0.58920
Statistical significance of signal value (-log10). Set to -1 if not used.
qValue
0.50330
Statistical significance with multiple-test correction applied (FDR -log10). Set to -1 if not used.
Sample Rows
chrom
chromStart
chromEnd
name
score
strand
signalValue
pValue
qValue
chr2L
15682419
15684246
punctate_MUSIC_L1_PolII_ERs_342
50
+
3
0.58920
0.50330
chr2L
15718085
15718338
punctate_MUSIC_L1_PolII_ERs_343
56
+
5
0.64969
0.56840
chr2L
15750507
15751035
punctate_MUSIC_L1_PolII_ERs_344
56
+
3
0.64569
0.56391
chr2L
15762549
15762869
punctate_MUSIC_L1_PolII_ERs_345
103
+
7
1.08687
1.03868
chr2L
15764255
15764624
punctate_MUSIC_L1_PolII_ERs_346
15
+
3
0.26090
0.15208
chr2L
15909806
15912703
punctate_MUSIC_L1_PolII_ERs_347
16
+
1
0.27149
0.16267
chr2L
16231366
16232195
punctate_MUSIC_L1_PolII_ERs_348
21
+
2
0.32482
0.21997
chr2L
16249542
16249975
punctate_MUSIC_L1_PolII_ERs_349
12
+
2
0.23447
0.12367
chr2L
16251571
16251859
punctate_MUSIC_L1_PolII_ERs_350
50
+
3
0.59197
0.50636
chr2L
16254644
16258460
punctate_MUSIC_L1_PolII_ERs_351
11
+
1
0.22822
0.11725
MUSIC PolII ChIP-Seq Peaks (modENCODE_polII_MUSIC_peaks) Track Description
Description
These tracks show the regions in the genome that are significantly enriched in RNA Polymerase II
ChIP-Seq reads at different developmental stages as determined by
MUSIC.
The ChIP-Seq data were produced as part of the modENCODE project
and were obtained from the NCBI Sequence Reads Archive under the accession number
SRP001424.