Schema for MUSIC PolII ChIP-Seq Peaks - modENCODE RNA Polymerase ChIP-Seq Peaks Identified by MUSIC
Database: dm6 Primary Table: punctate_MUSIC_L2_PolII Data last updated: 2016-07-11 Big Bed File: /gbdb/dm6/bbi/punctate_MUSIC_L2_PolII_ERs.bb Item Count: 392 Format description: BED6+3 Peaks of signal enrichment based on pooled, normalized (interpreted) data.
field
example
description
chrom
chr2L
Reference sequence chromosome or scaffold
chromStart
16256578
Start position in chromosome
chromEnd
16258998
End position in chromosome
name
punctate_MUSIC_L2_PolII_ERs_47
Name given to a region (preferably unique). Use . if no name is assigned.
score
12
Indicates how dark the peak will be displayed in the browser (0-1000)
strand
+
+ or - or . for unknown
signalValue
1
Measurement of average enrichment for the region
pValue
0.34700
Statistical significance of signal value (-log10). Set to -1 if not used.
qValue
0.12616
Statistical significance with multiple-test correction applied (FDR -log10). Set to -1 if not used.
Sample Rows
chrom
chromStart
chromEnd
name
score
strand
signalValue
pValue
qValue
chr2L
16256578
16258998
punctate_MUSIC_L2_PolII_ERs_47
12
+
1
0.34700
0.12616
chr2L
16264240
16264599
punctate_MUSIC_L2_PolII_ERs_48
22
+
3
0.43474
0.22054
chr2L
16287200
16288544
punctate_MUSIC_L2_PolII_ERs_49
26
+
2
0.47748
0.26968
chr2L
16886932
16889133
punctate_MUSIC_L2_PolII_ERs_50
17
+
2
0.39208
0.17345
chr2L
17383849
17385977
punctate_MUSIC_L2_PolII_ERs_51
35
+
2
0.54599
0.35744
chr2L
17450133
17450415
punctate_MUSIC_L2_PolII_ERs_52
16
+
2
0.38353
0.16261
chr2L
18149924
18152604
punctate_MUSIC_L2_PolII_ERs_53
12
+
1
0.34778
0.12631
chr2L
18441704
18443462
punctate_MUSIC_L2_PolII_ERs_54
33
+
4
0.52630
0.33285
chr2L
18813154
18813693
punctate_MUSIC_L2_PolII_ERs_55
16
+
3
0.38040
0.16032
chr2L
18985190
18988039
punctate_MUSIC_L2_PolII_ERs_56
12
+
1
0.35063
0.12875
MUSIC PolII ChIP-Seq Peaks (modENCODE_polII_MUSIC_peaks) Track Description
Description
These tracks show the regions in the genome that are significantly enriched in RNA Polymerase II
ChIP-Seq reads at different developmental stages as determined by
MUSIC.
The ChIP-Seq data were produced as part of the modENCODE project
and were obtained from the NCBI Sequence Reads Archive under the accession number
SRP001424.