Schema for MUSIC PolII ChIP-Seq Peaks - modENCODE RNA Polymerase ChIP-Seq Peaks Identified by MUSIC
Database: dm6 Primary Table: punctate_MUSIC_L3_PolII Data last updated: 2016-07-11 Big Bed File: /gbdb/dm6/bbi/punctate_MUSIC_L3_PolII_ERs.bb Item Count: 3,592 Format description: BED6+3 Peaks of signal enrichment based on pooled, normalized (interpreted) data.
field
example
description
chrom
chr2L
Reference sequence chromosome or scaffold
chromStart
15683080
Start position in chromosome
chromEnd
15683279
End position in chromosome
name
punctate_MUSIC_L3_PolII_ERs_439
Name given to a region (preferably unique). Use . if no name is assigned.
score
18
Indicates how dark the peak will be displayed in the browser (0-1000)
strand
+
+ or - or . for unknown
signalValue
6
Measurement of average enrichment for the region
pValue
0.28471
Statistical significance of signal value (-log10). Set to -1 if not used.
qValue
0.18034
Statistical significance with multiple-test correction applied (FDR -log10). Set to -1 if not used.
Sample Rows
chrom
chromStart
chromEnd
name
score
strand
signalValue
pValue
qValue
chr2L
15683080
15683279
punctate_MUSIC_L3_PolII_ERs_439
18
+
6
0.28471
0.18034
chr2L
15718072
15718334
punctate_MUSIC_L3_PolII_ERs_440
39
+
3
0.47440
0.39082
chr2L
15762103
15762904
punctate_MUSIC_L3_PolII_ERs_441
128
+
5
1.31213
1.28210
chr2L
16231366
16232193
punctate_MUSIC_L3_PolII_ERs_442
19
+
2
0.29468
0.19166
chr2L
16251404
16251929
punctate_MUSIC_L3_PolII_ERs_443
75
+
3
0.80876
0.75652
chr2L
16253917
16258864
punctate_MUSIC_L3_PolII_ERs_444
29
+
1
0.38642
0.29302
chr2L
16284245
16285778
punctate_MUSIC_L3_PolII_ERs_445
24
+
1
0.34360
0.24484
chr2L
16286932
16288497
punctate_MUSIC_L3_PolII_ERs_446
167
+
4
1.69892
1.67454
chr2L
16299519
16299818
punctate_MUSIC_L3_PolII_ERs_447
31
+
2
0.40725
0.31591
chr2L
16324940
16326231
punctate_MUSIC_L3_PolII_ERs_448
143
+
4
1.46209
1.43484
MUSIC PolII ChIP-Seq Peaks (modENCODE_polII_MUSIC_peaks) Track Description
Description
These tracks show the regions in the genome that are significantly enriched in RNA Polymerase II
ChIP-Seq reads at different developmental stages as determined by
MUSIC.
The ChIP-Seq data were produced as part of the modENCODE project
and were obtained from the NCBI Sequence Reads Archive under the accession number
SRP001424.