Schema for MUSIC PolII ChIP-Seq Peaks - modENCODE RNA Polymerase ChIP-Seq Peaks Identified by MUSIC
Database: dm6 Primary Table: punctate_MUSIC_Pupae_PolII Data last updated: 2016-07-11 Big Bed File: /gbdb/dm6/bbi/punctate_MUSIC_Pupae_PolII_ERs.bb Item Count: 6,348 Format description: BED6+3 Peaks of signal enrichment based on pooled, normalized (interpreted) data.
field
example
description
chrom
chr2L
Reference sequence chromosome or scaffold
chromStart
15683063
Start position in chromosome
chromEnd
15683475
End position in chromosome
name
punctate_MUSIC_Pupae_PolII_ERs_752
Name given to a region (preferably unique). Use . if no name is assigned.
score
51
Indicates how dark the peak will be displayed in the browser (0-1000)
strand
+
+ or - or . for unknown
signalValue
5
Measurement of average enrichment for the region
pValue
0.55293
Statistical significance of signal value (-log10). Set to -1 if not used.
qValue
0.51561
Statistical significance with multiple-test correction applied (FDR -log10). Set to -1 if not used.
Sample Rows
chrom
chromStart
chromEnd
name
score
strand
signalValue
pValue
qValue
chr2L
15683063
15683475
punctate_MUSIC_Pupae_PolII_ERs_752
51
+
5
0.55293
0.51561
chr2L
15696001
15696240
punctate_MUSIC_Pupae_PolII_ERs_753
25
+
6
0.30507
0.25400
chr2L
15718068
15718545
punctate_MUSIC_Pupae_PolII_ERs_754
96
+
10
0.98294
0.96176
chr2L
15750493
15751206
punctate_MUSIC_Pupae_PolII_ERs_755
69
+
2
0.72502
0.69562
chr2L
15762531
15762877
punctate_MUSIC_Pupae_PolII_ERs_756
196
+
9
1.97183
1.96402
chr2L
15764205
15764622
punctate_MUSIC_Pupae_PolII_ERs_757
74
+
2
0.77144
0.74374
chr2L
15962282
15962548
punctate_MUSIC_Pupae_PolII_ERs_758
24
+
2
0.30068
0.24954
chr2L
16000445
16000645
punctate_MUSIC_Pupae_PolII_ERs_759
21
+
5
0.26979
0.21684
chr2L
16049864
16050103
punctate_MUSIC_Pupae_PolII_ERs_760
29
+
9
0.34214
0.29331
chr2L
16165781
16165992
punctate_MUSIC_Pupae_PolII_ERs_761
36
+
31
0.40968
0.36471
MUSIC PolII ChIP-Seq Peaks (modENCODE_polII_MUSIC_peaks) Track Description
Description
These tracks show the regions in the genome that are significantly enriched in RNA Polymerase II
ChIP-Seq reads at different developmental stages as determined by
MUSIC.
The ChIP-Seq data were produced as part of the modENCODE project
and were obtained from the NCBI Sequence Reads Archive under the accession number
SRP001424.