Schema for modENCODE Chromosomal Proteins (R5) - modENCODE ChIP-chip Data for Chromosomal Proteins (R5)

Database: dm6 Primary Table: modENCODE_GSE20811_cluster Row Count: 537 Data last updated: 2022-10-21

field	example	SQL type	info
`bin`	586	`smallint(5) unsigned`	range
`chrom`	chr2L	`varchar(255)`	values
`chromStart`	203391	`int(10) unsigned`	range
`chromEnd`	204604	`int(10) unsigned`	range
`name`	GSE20811_enriched_256	`varchar(255)`	values
`score`	145	`int(10) unsigned`	range
`strand`	+	`char(1)`	values
`signalValue`	1.45431	`float`	range
`pValue`	-1	`float`	range
`qValue`	-1	`float`	range

Sample Rows

bin	chrom	chromStart	chromEnd	name	score	strand	signalValue	pValue	qValue
586	chr2L	203391	204604	GSE20811_enriched_256	145	+	1.45431	-1	-1
588	chr2L	420790	421975	GSE20811_enriched_257	273	+	2.73118	-1	-1
591	chr2L	819023	820062	GSE20811_enriched_258	142	+	1.42111	-1	-1
593	chr2L	1077507	1078621	GSE20811_enriched_259	277	+	2.77065	-1	-1
593	chr2L	1169540	1170545	GSE20811_enriched_260	312	+	3.11685	-1	-1
600	chr2L	1980305	1981360	GSE20811_enriched_261	212	+	2.12476	-1	-1
603	chr2L	2451085	2452117	GSE20811_enriched_262	98	+	0.976161	-1	-1
606	chr2L	2759233	2760378	GSE20811_enriched_263	289	+	2.89171	-1	-1
607	chr2L	2998837	3001489	GSE20811_enriched_264	185	+	1.85322	-1	-1
9	chr2L	3144391	3146089	GSE20811_enriched_265	228	+	2.27576	-1	-1

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

modENCODE Chromosomal Proteins (R5) (modENCODE_proteins_ChIPchip) Track Description

modENCODE ChIP-chip Sample Details

Description

These tracks show the ChIP-chip enrichment profiles for different chromosomal proteins in BG3, Kc167, and S2 cell lines that were produced by the modENCODE project. The replicate set (repset) datasets were obtained from the NCBI BioProject database under the accession number PRJNA63463, and from the modENCODE data portal. The results were lifted from the D. melanogaster Release 5 assembly over to the Release 6 assembly.

modENCODE ChIP-chip Datasets

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References

Kharchenko PV, Alekseyenko AA, Schwartz YB, Minoda A, Riddle NC, Ernst J, Sabo PJ, Larschan E, Gorchakov AA, Gu T, Linder-Basso D, Plachetka A, Shanower G, Tolstorukov MY, Luquette LJ, Xi R, Jung YL, Park RW, Bishop EP, Canfield TK, Sandstrom R, Thurman RE, MacAlpine DM, Stamatoyannopoulos JA, Kellis M, Elgin SC, Kuroda MI, Pirrotta V, Karpen GH, Park PJ. Comprehensive analysis of the chromatin landscape in Drosophila melanogaster. Nature. 2011 Mar 24;471(7339):480-5.