Schema for modENCODE Chromosomal Proteins (R5) - modENCODE ChIP-chip Data for Chromosomal Proteins (R5)

Database: dm6 Primary Table: modENCODE_GSE20829_cluster Row Count: 6,248 Data last updated: 2022-10-21

field	example	SQL type	info
`bin`	585	`smallint(5) unsigned`	range
`chrom`	chr2L	`varchar(255)`	values
`chromStart`	16100	`int(10) unsigned`	range
`chromEnd`	22424	`int(10) unsigned`	range
`name`	GSE20829_enriched_2719	`varchar(255)`	values
`score`	201	`int(10) unsigned`	range
`strand`	+	`char(1)`	values
`signalValue`	2.01328	`float`	range
`pValue`	-1	`float`	range
`qValue`	-1	`float`	range

Sample Rows

bin	chrom	chromStart	chromEnd	name	score	strand	signalValue	pValue	qValue
585	chr2L	16100	22424	GSE20829_enriched_2719	201	+	2.01328	-1	-1
585	chr2L	35075	36078	GSE20829_enriched_2720	63	+	0.630757	-1	-1
585	chr2L	64959	68581	GSE20829_enriched_2721	172	+	1.71918	-1	-1
585	chr2L	71821	75102	GSE20829_enriched_2722	210	+	2.096	-1	-1
585	chr2L	85131	86189	GSE20829_enriched_2723	76	+	0.756515	-1	-1
585	chr2L	93683	95612	GSE20829_enriched_2724	108	+	1.08397	-1	-1
585	chr2L	102154	104140	GSE20829_enriched_2725	95	+	0.950506	-1	-1
585	chr2L	104954	110219	GSE20829_enriched_2726	179	+	1.78989	-1	-1
585	chr2L	120607	121934	GSE20829_enriched_2727	78	+	0.777254	-1	-1
585	chr2L	127472	130071	GSE20829_enriched_2728	123	+	1.22622	-1	-1

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

modENCODE Chromosomal Proteins (R5) (modENCODE_proteins_ChIPchip) Track Description

modENCODE ChIP-chip Sample Details

Description

These tracks show the ChIP-chip enrichment profiles for different chromosomal proteins in BG3, Kc167, and S2 cell lines that were produced by the modENCODE project. The replicate set (repset) datasets were obtained from the NCBI BioProject database under the accession number PRJNA63463, and from the modENCODE data portal. The results were lifted from the D. melanogaster Release 5 assembly over to the Release 6 assembly.

modENCODE ChIP-chip Datasets

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References

Kharchenko PV, Alekseyenko AA, Schwartz YB, Minoda A, Riddle NC, Ernst J, Sabo PJ, Larschan E, Gorchakov AA, Gu T, Linder-Basso D, Plachetka A, Shanower G, Tolstorukov MY, Luquette LJ, Xi R, Jung YL, Park RW, Bishop EP, Canfield TK, Sandstrom R, Thurman RE, MacAlpine DM, Stamatoyannopoulos JA, Kellis M, Elgin SC, Kuroda MI, Pirrotta V, Karpen GH, Park PJ. Comprehensive analysis of the chromatin landscape in Drosophila melanogaster. Nature. 2011 Mar 24;471(7339):480-5.