Schema for modENCODE Chromosomal Proteins (R5) - modENCODE ChIP-chip Data for Chromosomal Proteins (R5)

Database: dm6 Primary Table: modENCODE_GSE20834_cluster Row Count: 2,155 Data last updated: 2022-10-21

field	example	SQL type	info
`bin`	604	`smallint(5) unsigned`	range
`chrom`	chr2L	`varchar(255)`	values
`chromStart`	2503795	`int(10) unsigned`	range
`chromEnd`	2504896	`int(10) unsigned`	range
`name`	GSE20834_enriched_561	`varchar(255)`	values
`score`	74	`int(10) unsigned`	range
`strand`	+	`char(1)`	values
`signalValue`	0.744495	`float`	range
`pValue`	-1	`float`	range
`qValue`	-1	`float`	range

Sample Rows

bin	chrom	chromStart	chromEnd	name	score	strand	signalValue	pValue	qValue
604	chr2L	2503795	2504896	GSE20834_enriched_561	74	+	0.744495	-1	-1
617	chr2L	4198866	4199963	GSE20834_enriched_562	102	+	1.02477	-1	-1
617	chr2L	4302736	4303742	GSE20834_enriched_563	77	+	0.774869	-1	-1
620	chr2L	4597530	4598651	GSE20834_enriched_564	85	+	0.846499	-1	-1
620	chr2L	4636011	4638037	GSE20834_enriched_565	100	+	0.999651	-1	-1
633	chr2L	6311413	6312940	GSE20834_enriched_566	69	+	0.686901	-1	-1
649	chr2L	8428481	8429665	GSE20834_enriched_567	167	+	1.67423	-1	-1
663	chr2L	10229092	10230325	GSE20834_enriched_568	74	+	0.736392	-1	-1
663	chr2L	10236312	10238552	GSE20834_enriched_569	110	+	1.09611	-1	-1
82	chr2L	10353153	10354769	GSE20834_enriched_570	126	+	1.25924	-1	-1

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

modENCODE Chromosomal Proteins (R5) (modENCODE_proteins_ChIPchip) Track Description

modENCODE ChIP-chip Sample Details

Description

These tracks show the ChIP-chip enrichment profiles for different chromosomal proteins in BG3, Kc167, and S2 cell lines that were produced by the modENCODE project. The replicate set (repset) datasets were obtained from the NCBI BioProject database under the accession number PRJNA63463, and from the modENCODE data portal. The results were lifted from the D. melanogaster Release 5 assembly over to the Release 6 assembly.

modENCODE ChIP-chip Datasets

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References

Kharchenko PV, Alekseyenko AA, Schwartz YB, Minoda A, Riddle NC, Ernst J, Sabo PJ, Larschan E, Gorchakov AA, Gu T, Linder-Basso D, Plachetka A, Shanower G, Tolstorukov MY, Luquette LJ, Xi R, Jung YL, Park RW, Bishop EP, Canfield TK, Sandstrom R, Thurman RE, MacAlpine DM, Stamatoyannopoulos JA, Kellis M, Elgin SC, Kuroda MI, Pirrotta V, Karpen GH, Park PJ. Comprehensive analysis of the chromatin landscape in Drosophila melanogaster. Nature. 2011 Mar 24;471(7339):480-5.