Schema for modENCODE Chromosomal Proteins (R5) - modENCODE ChIP-chip Data for Chromosomal Proteins (R5)

Database: dm6 Primary Table: modENCODE_GSE25371_cluster Row Count: 800 Data last updated: 2022-10-21

field	example	SQL type	info
`bin`	585	`smallint(5) unsigned`	range
`chrom`	chr2L	`varchar(255)`	values
`chromStart`	7050	`int(10) unsigned`	range
`chromEnd`	9515	`int(10) unsigned`	range
`name`	GSE25371_enriched_403	`varchar(255)`	values
`score`	96	`int(10) unsigned`	range
`strand`	+	`char(1)`	values
`signalValue`	0.961271	`float`	range
`pValue`	-1	`float`	range
`qValue`	-1	`float`	range

Sample Rows

bin	chrom	chromStart	chromEnd	name	score	strand	signalValue	pValue	qValue
585	chr2L	7050	9515	GSE25371_enriched_403	96	+	0.961271	-1	-1
585	chr2L	11264	12497	GSE25371_enriched_404	47	+	0.467552	-1	-1
585	chr2L	97957	99116	GSE25371_enriched_405	56	+	0.5559	-1	-1
586	chr2L	187520	189044	GSE25371_enriched_406	58	+	0.580494	-1	-1
586	chr2L	198510	200242	GSE25371_enriched_407	109	+	1.09243	-1	-1
586	chr2L	201019	202683	GSE25371_enriched_408	76	+	0.758703	-1	-1
586	chr2L	238032	239431	GSE25371_enriched_409	57	+	0.572944	-1	-1
587	chr2L	345680	347124	GSE25371_enriched_410	63	+	0.629901	-1	-1
588	chr2L	445688	446769	GSE25371_enriched_411	91	+	0.911576	-1	-1
588	chr2L	476900	478253	GSE25371_enriched_412	47	+	0.473409	-1	-1

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

modENCODE Chromosomal Proteins (R5) (modENCODE_proteins_ChIPchip) Track Description

modENCODE ChIP-chip Sample Details

Description

These tracks show the ChIP-chip enrichment profiles for different chromosomal proteins in BG3, Kc167, and S2 cell lines that were produced by the modENCODE project. The replicate set (repset) datasets were obtained from the NCBI BioProject database under the accession number PRJNA63463, and from the modENCODE data portal. The results were lifted from the D. melanogaster Release 5 assembly over to the Release 6 assembly.

modENCODE ChIP-chip Datasets

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References

Kharchenko PV, Alekseyenko AA, Schwartz YB, Minoda A, Riddle NC, Ernst J, Sabo PJ, Larschan E, Gorchakov AA, Gu T, Linder-Basso D, Plachetka A, Shanower G, Tolstorukov MY, Luquette LJ, Xi R, Jung YL, Park RW, Bishop EP, Canfield TK, Sandstrom R, Thurman RE, MacAlpine DM, Stamatoyannopoulos JA, Kellis M, Elgin SC, Kuroda MI, Pirrotta V, Karpen GH, Park PJ. Comprehensive analysis of the chromatin landscape in Drosophila melanogaster. Nature. 2011 Mar 24;471(7339):480-5.