Schema for modENCODE Chromosomal Proteins (R5) - modENCODE ChIP-chip Data for Chromosomal Proteins (R5)

Database: dm6 Primary Table: modENCODE_GSE27765_cluster Row Count: 1,188 Data last updated: 2022-10-21

field	example	SQL type	info
`bin`	585	`smallint(5) unsigned`	range
`chrom`	chr2L	`varchar(255)`	values
`chromStart`	6028	`int(10) unsigned`	range
`chromEnd`	9675	`int(10) unsigned`	range
`name`	GSE27765_enriched_565	`varchar(255)`	values
`score`	102	`int(10) unsigned`	range
`strand`	+	`char(1)`	values
`signalValue`	1.01521	`float`	range
`pValue`	-1	`float`	range
`qValue`	-1	`float`	range

Sample Rows

bin	chrom	chromStart	chromEnd	name	score	strand	signalValue	pValue	qValue
585	chr2L	6028	9675	GSE27765_enriched_565	102	+	1.01521	-1	-1
588	chr2L	479546	480854	GSE27765_enriched_566	86	+	0.856593	-1	-1
589	chr2L	586964	594868	GSE27765_enriched_567	289	+	2.88699	-1	-1
589	chr2L	594988	598560	GSE27765_enriched_568	248	+	2.48187	-1	-1
589	chr2L	599311	601515	GSE27765_enriched_569	91	+	0.907354	-1	-1
589	chr2L	604913	606346	GSE27765_enriched_570	90	+	0.895603	-1	-1
589	chr2L	606506	607611	GSE27765_enriched_571	128	+	1.27597	-1	-1
595	chr2L	1408038	1409082	GSE27765_enriched_572	116	+	1.16118	-1	-1
595	chr2L	1433867	1435199	GSE27765_enriched_573	88	+	0.878997	-1	-1
597	chr2L	1607057	1608701	GSE27765_enriched_574	85	+	0.850963	-1	-1

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

modENCODE Chromosomal Proteins (R5) (modENCODE_proteins_ChIPchip) Track Description

modENCODE ChIP-chip Sample Details

Description

These tracks show the ChIP-chip enrichment profiles for different chromosomal proteins in BG3, Kc167, and S2 cell lines that were produced by the modENCODE project. The replicate set (repset) datasets were obtained from the NCBI BioProject database under the accession number PRJNA63463, and from the modENCODE data portal. The results were lifted from the D. melanogaster Release 5 assembly over to the Release 6 assembly.

modENCODE ChIP-chip Datasets

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References

Kharchenko PV, Alekseyenko AA, Schwartz YB, Minoda A, Riddle NC, Ernst J, Sabo PJ, Larschan E, Gorchakov AA, Gu T, Linder-Basso D, Plachetka A, Shanower G, Tolstorukov MY, Luquette LJ, Xi R, Jung YL, Park RW, Bishop EP, Canfield TK, Sandstrom R, Thurman RE, MacAlpine DM, Stamatoyannopoulos JA, Kellis M, Elgin SC, Kuroda MI, Pirrotta V, Karpen GH, Park PJ. Comprehensive analysis of the chromatin landscape in Drosophila melanogaster. Nature. 2011 Mar 24;471(7339):480-5.