Schema for modENCODE Chromosomal Proteins (R5) - modENCODE ChIP-chip Data for Chromosomal Proteins (R5)

Database: dm6 Primary Table: modENCODE_GSE27768_cluster Row Count: 3,475 Data last updated: 2022-10-21

field	example	SQL type	info
`bin`	585	`smallint(5) unsigned`	range
`chrom`	chr2L	`varchar(255)`	values
`chromStart`	17767	`int(10) unsigned`	range
`chromEnd`	18858	`int(10) unsigned`	range
`name`	GSE27768_enriched_1641	`varchar(255)`	values
`score`	106	`int(10) unsigned`	range
`strand`	+	`char(1)`	values
`signalValue`	1.06139	`float`	range
`pValue`	-1	`float`	range
`qValue`	-1	`float`	range

Sample Rows

bin	chrom	chromStart	chromEnd	name	score	strand	signalValue	pValue	qValue
585	chr2L	17767	18858	GSE27768_enriched_1641	106	+	1.06139	-1	-1
585	chr2L	20572	21653	GSE27768_enriched_1642	105	+	1.05261	-1	-1
585	chr2L	66356	67806	GSE27768_enriched_1643	120	+	1.20269	-1	-1
585	chr2L	71624	74397	GSE27768_enriched_1644	163	+	1.62746	-1	-1
585	chr2L	74621	75750	GSE27768_enriched_1645	61	+	0.614817	-1	-1
585	chr2L	84461	86068	GSE27768_enriched_1646	70	+	0.702211	-1	-1
585	chr2L	86973	87981	GSE27768_enriched_1647	46	+	0.459399	-1	-1
585	chr2L	104800	106976	GSE27768_enriched_1648	132	+	1.31787	-1	-1
585	chr2L	107601	109040	GSE27768_enriched_1649	121	+	1.21376	-1	-1
585	chr2L	109158	110372	GSE27768_enriched_1650	121	+	1.21399	-1	-1

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

modENCODE Chromosomal Proteins (R5) (modENCODE_proteins_ChIPchip) Track Description

modENCODE ChIP-chip Sample Details

Description

These tracks show the ChIP-chip enrichment profiles for different chromosomal proteins in BG3, Kc167, and S2 cell lines that were produced by the modENCODE project. The replicate set (repset) datasets were obtained from the NCBI BioProject database under the accession number PRJNA63463, and from the modENCODE data portal. The results were lifted from the D. melanogaster Release 5 assembly over to the Release 6 assembly.

modENCODE ChIP-chip Datasets

View in Google Sheets

References

Kharchenko PV, Alekseyenko AA, Schwartz YB, Minoda A, Riddle NC, Ernst J, Sabo PJ, Larschan E, Gorchakov AA, Gu T, Linder-Basso D, Plachetka A, Shanower G, Tolstorukov MY, Luquette LJ, Xi R, Jung YL, Park RW, Bishop EP, Canfield TK, Sandstrom R, Thurman RE, MacAlpine DM, Stamatoyannopoulos JA, Kellis M, Elgin SC, Kuroda MI, Pirrotta V, Karpen GH, Park PJ. Comprehensive analysis of the chromatin landscape in Drosophila melanogaster. Nature. 2011 Mar 24;471(7339):480-5.