Schema for modENCODE Chromosomal Proteins (R5) - modENCODE ChIP-chip Data for Chromosomal Proteins (R5)

Database: dm6 Primary Table: modENCODE_GSE32817_cluster Row Count: 2,524 Data last updated: 2022-10-21

field	example	SQL type	info
`bin`	585	`smallint(5) unsigned`	range
`chrom`	chr2L	`varchar(255)`	values
`chromStart`	64959	`int(10) unsigned`	range
`chromEnd`	67160	`int(10) unsigned`	range
`name`	GSE32817_enriched_1122	`varchar(255)`	values
`score`	148	`int(10) unsigned`	range
`strand`	+	`char(1)`	values
`signalValue`	1.47545	`float`	range
`pValue`	-1	`float`	range
`qValue`	-1	`float`	range

Sample Rows

bin	chrom	chromStart	chromEnd	name	score	strand	signalValue	pValue	qValue
585	chr2L	64959	67160	GSE32817_enriched_1122	148	+	1.47545	-1	-1
585	chr2L	72739	74044	GSE32817_enriched_1123	209	+	2.0852	-1	-1
585	chr2L	106621	108124	GSE32817_enriched_1124	70	+	0.698476	-1	-1
73	chr2L	129753	132139	GSE32817_enriched_1125	157	+	1.56863	-1	-1
586	chr2L	158540	159885	GSE32817_enriched_1126	120	+	1.20046	-1	-1
586	chr2L	247695	249422	GSE32817_enriched_1127	70	+	0.704733	-1	-1
586	chr2L	251621	252688	GSE32817_enriched_1128	82	+	0.816248	-1	-1
587	chr2L	297103	298432	GSE32817_enriched_1129	118	+	1.17945	-1	-1
587	chr2L	312678	317498	GSE32817_enriched_1130	181	+	1.80686	-1	-1
588	chr2L	395110	396259	GSE32817_enriched_1131	76	+	0.760114	-1	-1

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

modENCODE Chromosomal Proteins (R5) (modENCODE_proteins_ChIPchip) Track Description

modENCODE ChIP-chip Sample Details

Description

These tracks show the ChIP-chip enrichment profiles for different chromosomal proteins in BG3, Kc167, and S2 cell lines that were produced by the modENCODE project. The replicate set (repset) datasets were obtained from the NCBI BioProject database under the accession number PRJNA63463, and from the modENCODE data portal. The results were lifted from the D. melanogaster Release 5 assembly over to the Release 6 assembly.

modENCODE ChIP-chip Datasets

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References

Kharchenko PV, Alekseyenko AA, Schwartz YB, Minoda A, Riddle NC, Ernst J, Sabo PJ, Larschan E, Gorchakov AA, Gu T, Linder-Basso D, Plachetka A, Shanower G, Tolstorukov MY, Luquette LJ, Xi R, Jung YL, Park RW, Bishop EP, Canfield TK, Sandstrom R, Thurman RE, MacAlpine DM, Stamatoyannopoulos JA, Kellis M, Elgin SC, Kuroda MI, Pirrotta V, Karpen GH, Park PJ. Comprehensive analysis of the chromatin landscape in Drosophila melanogaster. Nature. 2011 Mar 24;471(7339):480-5.