Schema for modENCODE Chromosomal Proteins (R5) - modENCODE ChIP-chip Data for Chromosomal Proteins (R5)

Database: dm6 Primary Table: modENCODE_GSE32821_cluster Row Count: 687 Data last updated: 2022-10-21

field	example	SQL type	info
`bin`	588	`smallint(5) unsigned`	range
`chrom`	chr2L	`varchar(255)`	values
`chromStart`	431039	`int(10) unsigned`	range
`chromEnd`	432177	`int(10) unsigned`	range
`name`	GSE32821_enriched_320	`varchar(255)`	values
`score`	110	`int(10) unsigned`	range
`strand`	+	`char(1)`	values
`signalValue`	1.10451	`float`	range
`pValue`	-1	`float`	range
`qValue`	-1	`float`	range

Sample Rows

bin	chrom	chromStart	chromEnd	name	score	strand	signalValue	pValue	qValue
588	chr2L	431039	432177	GSE32821_enriched_320	110	+	1.10451	-1	-1
588	chr2L	502376	503416	GSE32821_enriched_321	46	+	0.459029	-1	-1
589	chr2L	590066	592651	GSE32821_enriched_322	82	+	0.817076	-1	-1
589	chr2L	593703	594868	GSE32821_enriched_323	112	+	1.12438	-1	-1
589	chr2L	596293	597462	GSE32821_enriched_324	71	+	0.714428	-1	-1
597	chr2L	1629271	1635479	GSE32821_enriched_325	147	+	1.47033	-1	-1
597	chr2L	1635667	1638675	GSE32821_enriched_326	124	+	1.23779	-1	-1
597	chr2L	1638979	1644283	GSE32821_enriched_327	257	+	2.56824	-1	-1
597	chr2L	1644387	1648171	GSE32821_enriched_328	214	+	2.14329	-1	-1
597	chr2L	1649148	1654486	GSE32821_enriched_329	169	+	1.68734	-1	-1

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

modENCODE Chromosomal Proteins (R5) (modENCODE_proteins_ChIPchip) Track Description

modENCODE ChIP-chip Sample Details

Description

These tracks show the ChIP-chip enrichment profiles for different chromosomal proteins in BG3, Kc167, and S2 cell lines that were produced by the modENCODE project. The replicate set (repset) datasets were obtained from the NCBI BioProject database under the accession number PRJNA63463, and from the modENCODE data portal. The results were lifted from the D. melanogaster Release 5 assembly over to the Release 6 assembly.

modENCODE ChIP-chip Datasets

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References

Kharchenko PV, Alekseyenko AA, Schwartz YB, Minoda A, Riddle NC, Ernst J, Sabo PJ, Larschan E, Gorchakov AA, Gu T, Linder-Basso D, Plachetka A, Shanower G, Tolstorukov MY, Luquette LJ, Xi R, Jung YL, Park RW, Bishop EP, Canfield TK, Sandstrom R, Thurman RE, MacAlpine DM, Stamatoyannopoulos JA, Kellis M, Elgin SC, Kuroda MI, Pirrotta V, Karpen GH, Park PJ. Comprehensive analysis of the chromatin landscape in Drosophila melanogaster. Nature. 2011 Mar 24;471(7339):480-5.