Schema for modENCODE Chromosomal Proteins (R5) - modENCODE ChIP-chip Data for Chromosomal Proteins (R5)

Database: dm6 Primary Table: modENCODE_GSE32847_cluster Row Count: 1,385 Data last updated: 2022-10-21

field	example	SQL type	info
`bin`	586	`smallint(5) unsigned`	range
`chrom`	chr2L	`varchar(255)`	values
`chromStart`	221677	`int(10) unsigned`	range
`chromEnd`	223468	`int(10) unsigned`	range
`name`	GSE32847_enriched_622	`varchar(255)`	values
`score`	48	`int(10) unsigned`	range
`strand`	+	`char(1)`	values
`signalValue`	0.48105	`float`	range
`pValue`	-1	`float`	range
`qValue`	-1	`float`	range

Sample Rows

bin	chrom	chromStart	chromEnd	name	score	strand	signalValue	pValue	qValue
586	chr2L	221677	223468	GSE32847_enriched_622	48	+	0.48105	-1	-1
588	chr2L	478882	479959	GSE32847_enriched_623	42	+	0.420818	-1	-1
588	chr2L	491003	492543	GSE32847_enriched_624	54	+	0.538005	-1	-1
588	chr2L	503806	506651	GSE32847_enriched_625	113	+	1.13456	-1	-1
589	chr2L	524613	525742	GSE32847_enriched_626	65	+	0.654632	-1	-1
589	chr2L	525904	526974	GSE32847_enriched_627	76	+	0.763784	-1	-1
589	chr2L	585670	588669	GSE32847_enriched_628	77	+	0.774647	-1	-1
589	chr2L	589044	594868	GSE32847_enriched_629	174	+	1.74496	-1	-1
589	chr2L	594988	599117	GSE32847_enriched_630	169	+	1.68923	-1	-1
589	chr2L	599311	600525	GSE32847_enriched_631	70	+	0.69654	-1	-1

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

modENCODE Chromosomal Proteins (R5) (modENCODE_proteins_ChIPchip) Track Description

modENCODE ChIP-chip Sample Details

Description

These tracks show the ChIP-chip enrichment profiles for different chromosomal proteins in BG3, Kc167, and S2 cell lines that were produced by the modENCODE project. The replicate set (repset) datasets were obtained from the NCBI BioProject database under the accession number PRJNA63463, and from the modENCODE data portal. The results were lifted from the D. melanogaster Release 5 assembly over to the Release 6 assembly.

modENCODE ChIP-chip Datasets

View in Google Sheets

References

Kharchenko PV, Alekseyenko AA, Schwartz YB, Minoda A, Riddle NC, Ernst J, Sabo PJ, Larschan E, Gorchakov AA, Gu T, Linder-Basso D, Plachetka A, Shanower G, Tolstorukov MY, Luquette LJ, Xi R, Jung YL, Park RW, Bishop EP, Canfield TK, Sandstrom R, Thurman RE, MacAlpine DM, Stamatoyannopoulos JA, Kellis M, Elgin SC, Kuroda MI, Pirrotta V, Karpen GH, Park PJ. Comprehensive analysis of the chromatin landscape in Drosophila melanogaster. Nature. 2011 Mar 24;471(7339):480-5.