Schema for modENCODE Chromosomal Proteins (R5) - modENCODE ChIP-chip Data for Chromosomal Proteins (R5)

Database: dm6 Primary Table: modENCODE_GSE44515_cluster Row Count: 742 Data last updated: 2022-10-21

field	example	SQL type	info
`bin`	602	`smallint(5) unsigned`	range
`chrom`	chr2L	`varchar(255)`	values
`chromStart`	2250130	`int(10) unsigned`	range
`chromEnd`	2251211	`int(10) unsigned`	range
`name`	GSE44515_enriched_127	`varchar(255)`	values
`score`	97	`int(10) unsigned`	range
`strand`	+	`char(1)`	values
`signalValue`	0.965295	`float`	range
`pValue`	-1	`float`	range
`qValue`	-1	`float`	range

Sample Rows

bin	chrom	chromStart	chromEnd	name	score	strand	signalValue	pValue	qValue
602	chr2L	2250130	2251211	GSE44515_enriched_127	97	+	0.965295	-1	-1
604	chr2L	2503755	2504896	GSE44515_enriched_128	122	+	1.21861	-1	-1
606	chr2L	2865552	2866577	GSE44515_enriched_129	87	+	0.871029	-1	-1
617	chr2L	4205530	4206544	GSE44515_enriched_130	68	+	0.677391	-1	-1
622	chr2L	4901950	4902959	GSE44515_enriched_131	75	+	0.749634	-1	-1
625	chr2L	5293367	5294566	GSE44515_enriched_132	87	+	0.874572	-1	-1
631	chr2L	6131627	6132681	GSE44515_enriched_133	85	+	0.84988	-1	-1
635	chr2L	6565954	6566975	GSE44515_enriched_134	122	+	1.21523	-1	-1
636	chr2L	6791686	6792712	GSE44515_enriched_135	89	+	0.890922	-1	-1
638	chr2L	6946926	6947972	GSE44515_enriched_136	94	+	0.94247	-1	-1

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

modENCODE Chromosomal Proteins (R5) (modENCODE_proteins_ChIPchip) Track Description

modENCODE ChIP-chip Sample Details

Description

These tracks show the ChIP-chip enrichment profiles for different chromosomal proteins in BG3, Kc167, and S2 cell lines that were produced by the modENCODE project. The replicate set (repset) datasets were obtained from the NCBI BioProject database under the accession number PRJNA63463, and from the modENCODE data portal. The results were lifted from the D. melanogaster Release 5 assembly over to the Release 6 assembly.

modENCODE ChIP-chip Datasets

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References

Kharchenko PV, Alekseyenko AA, Schwartz YB, Minoda A, Riddle NC, Ernst J, Sabo PJ, Larschan E, Gorchakov AA, Gu T, Linder-Basso D, Plachetka A, Shanower G, Tolstorukov MY, Luquette LJ, Xi R, Jung YL, Park RW, Bishop EP, Canfield TK, Sandstrom R, Thurman RE, MacAlpine DM, Stamatoyannopoulos JA, Kellis M, Elgin SC, Kuroda MI, Pirrotta V, Karpen GH, Park PJ. Comprehensive analysis of the chromatin landscape in Drosophila melanogaster. Nature. 2011 Mar 24;471(7339):480-5.