Schema for modENCODE Chromosomal Proteins (R5) - modENCODE ChIP-chip Data for Chromosomal Proteins (R5)

Database: dm6 Primary Table: modENCODE_GSE45072_cluster Row Count: 1,887 Data last updated: 2022-10-21

field	example	SQL type	info
`bin`	585	`smallint(5) unsigned`	range
`chrom`	chr2L	`varchar(255)`	values
`chromStart`	17437	`int(10) unsigned`	range
`chromEnd`	19999	`int(10) unsigned`	range
`name`	GSE45072_enriched_876	`varchar(255)`	values
`score`	245	`int(10) unsigned`	range
`strand`	+	`char(1)`	values
`signalValue`	2.45325	`float`	range
`pValue`	-1	`float`	range
`qValue`	-1	`float`	range

Sample Rows

bin	chrom	chromStart	chromEnd	name	score	strand	signalValue	pValue	qValue
585	chr2L	17437	19999	GSE45072_enriched_876	245	+	2.45325	-1	-1
585	chr2L	20572	21830	GSE45072_enriched_877	260	+	2.60199	-1	-1
585	chr2L	38136	39226	GSE45072_enriched_878	107	+	1.07103	-1	-1
585	chr2L	52553	53965	GSE45072_enriched_879	66	+	0.658352	-1	-1
585	chr2L	66080	67767	GSE45072_enriched_880	136	+	1.36451	-1	-1
585	chr2L	106975	108884	GSE45072_enriched_881	105	+	1.05023	-1	-1
586	chr2L	154744	156875	GSE45072_enriched_882	156	+	1.56173	-1	-1
586	chr2L	157949	159415	GSE45072_enriched_883	111	+	1.11164	-1	-1
586	chr2L	247487	249091	GSE45072_enriched_884	133	+	1.33111	-1	-1
586	chr2L	251740	252769	GSE45072_enriched_885	159	+	1.59351	-1	-1

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

modENCODE Chromosomal Proteins (R5) (modENCODE_proteins_ChIPchip) Track Description

modENCODE ChIP-chip Sample Details

Description

These tracks show the ChIP-chip enrichment profiles for different chromosomal proteins in BG3, Kc167, and S2 cell lines that were produced by the modENCODE project. The replicate set (repset) datasets were obtained from the NCBI BioProject database under the accession number PRJNA63463, and from the modENCODE data portal. The results were lifted from the D. melanogaster Release 5 assembly over to the Release 6 assembly.

modENCODE ChIP-chip Datasets

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References

Kharchenko PV, Alekseyenko AA, Schwartz YB, Minoda A, Riddle NC, Ernst J, Sabo PJ, Larschan E, Gorchakov AA, Gu T, Linder-Basso D, Plachetka A, Shanower G, Tolstorukov MY, Luquette LJ, Xi R, Jung YL, Park RW, Bishop EP, Canfield TK, Sandstrom R, Thurman RE, MacAlpine DM, Stamatoyannopoulos JA, Kellis M, Elgin SC, Kuroda MI, Pirrotta V, Karpen GH, Park PJ. Comprehensive analysis of the chromatin landscape in Drosophila melanogaster. Nature. 2011 Mar 24;471(7339):480-5.