Schema for modERN TF Peaks - modERN Optimal Peaks for Transcription Factors

Database: dm6 Primary Table: modERN_adult_peak Row Count: 91,391 Data last updated: 2022-10-21

field	example	SQL type	info
`bin`	585	`smallint(5) unsigned`	range
`chrom`	chr2L	`varchar(255)`	values
`chromStart`	16560	`int(10) unsigned`	range
`chromEnd`	16791	`int(10) unsigned`	range
`name`	pad	`varchar(255)`	values
`score`	0	`int(10) unsigned`	range
`strand`	.	`char(1)`	values
`signalValue`	804.394	`float`	range
`pValue`	-1	`float`	range
`qValue`	3.94245	`float`	range
`peak`	125	`int(11)`	range

Sample Rows

bin	chrom	chromStart	chromEnd	name	strand	signalValue	pValue	qValue	peak
585	chr2L	16560	16791	pad	.	804.394	-1	3.94245	125
585	chr2L	16739	16961	pad	.	658.029	-1	3.94245	155
585	chr2L	19272	19762	pad	.	362.482	-1	3.49973	245
585	chr2L	19371	19811	ovo	.	76.9861	-1	1.96607	220
585	chr2L	19384	19888	tj	.	237.961	-1	4.37135	252
585	chr2L	19475	19965	pad	.	276.192	-1	3.62651	245
585	chr2L	42283	42787	tj	.	231.693	-1	4.37135	252
585	chr2L	56108	56449	tj	.	650.351	-1	4.37135	144
585	chr2L	66575	67019	CG7045	.	114.528	-1	4.08045	222
585	chr2L	66627	67067	ovo	.	87.0005	-1	2.3956	220

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

modERN TF Peaks (modERN_peaks) Track Description


	Description This track shows the transcription factor binding profiles that were produced by the model organism Encyclopedia of Regulatory Networks (modERN) project. The optimal peaks were obtained from the modERN project web site. The optimal peaks were then partitioned by developmental stages. The evidence tracks for the individual transcription factors are available through the ENCODE Portal. References Kudron MM, Victorsen A, Gevirtzman L, Hillier LW, Fisher WW, Vafeados D, Kirkey M, Hammonds AS, Gersch J, Ammouri H, Wall ML, Moran J, Steffen D, Szynkarek M, Seabrook-Sturgis S, Jameel N, Kadaba M, Patton J, Terrell R, Corson M, Durham TJ, Park S, Samanta S, Han M, Xu J, Yan KK, Celniker SE, White KP, Ma L, Gerstein M, Reinke V, Waterston RH. The ModERN Resource: Genome-Wide Binding Profiles for Hundreds of Drosophila and Caenorhabditis elegans Transcription Factors. Genetics. 2018 Mar;208(3):937-949.

Description