Schema for modERN TF Peaks - modERN Optimal Peaks for Transcription Factors
  Database: dm6    Primary Table: modERN_embryonic_peak    Row Count: 1,367,977   Data last updated: 2022-10-21
fieldexampleSQL type
bin 585smallint(5) unsigned
chrom chr2Lvarchar(255)
chromStart 5038int(10) unsigned
chromEnd 6115int(10) unsigned
name Trlvarchar(255)
score 0int(10) unsigned
strand .char(1)
signalValue 436.317float
pValue -1float
qValue 4.06262float
peak 701int(11)

Sample Rows
 
binchromchromStartchromEndnamescorestrandsignalValuepValueqValuepeak
585chr2L50386115Trl0.436.317-14.06262701
585chr2L54075967Trl0.852.623-12.44198280
585chr2L54975961E(bx)0.159.099-14.39042232
585chr2L54995915zen0.274.225-14.17664208
585chr2L55155971eve0.146.927-10.197667228
585chr2L56116171Trl0.643.55-11.58732280
585chr2L56156005Abd-B0.173.16-12.61132195
585chr2L56675862cad0.246.768-12.47632115
585chr2L56765820phol0.327.626-14.3521283
585chr2L63796835eve0.154.147-10.206407228

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

modERN TF Peaks (modERN_peaks) Track Description
 

Description

This track shows the transcription factor binding profiles that were produced by the model organism Encyclopedia of Regulatory Networks (modERN) project. The optimal peaks were obtained from the modERN project web site. The optimal peaks were then partitioned by developmental stages.

The evidence tracks for the individual transcription factors are available through the ENCODE Portal.

References

Kudron MM, Victorsen A, Gevirtzman L, Hillier LW, Fisher WW, Vafeados D, Kirkey M, Hammonds AS, Gersch J, Ammouri H, Wall ML, Moran J, Steffen D, Szynkarek M, Seabrook-Sturgis S, Jameel N, Kadaba M, Patton J, Terrell R, Corson M, Durham TJ, Park S, Samanta S, Han M, Xu J, Yan KK, Celniker SE, White KP, Ma L, Gerstein M, Reinke V, Waterston RH. The ModERN Resource: Genome-Wide Binding Profiles for Hundreds of Drosophila and Caenorhabditis elegans Transcription Factors. Genetics. 2018 Mar;208(3):937-949.