Schema for modERN TF Peaks - modERN Optimal Peaks for Transcription Factors

Database: dm6 Primary Table: modERN_prepupa_peak Row Count: 362,113 Data last updated: 2022-10-21

field	example	SQL type	info
`bin`	585	`smallint(5) unsigned`	range
`chrom`	chr2L	`varchar(255)`	values
`chromStart`	21742	`int(10) unsigned`	range
`chromEnd`	21868	`int(10) unsigned`	range
`name`	CG6276	`varchar(255)`	values
`score`	0	`int(10) unsigned`	range
`strand`	.	`char(1)`	values
`signalValue`	262.957	`float`	range
`pValue`	-1	`float`	range
`qValue`	3.8947	`float`	range
`peak`	74	`int(11)`	range

Sample Rows

bin	chrom	chromStart	chromEnd	name	strand	signalValue	pValue	qValue	peak
585	chr2L	21742	21868	CG6276	.	262.957	-1	3.8947	74
585	chr2L	54874	55344	Blimp-1	.	210.445	-1	3.55795	235
585	chr2L	59035	59499	ss	.	151.835	-1	3.38507	232
585	chr2L	59039	59499	net	.	239.765	-1	3.95332	230
585	chr2L	59357	59478	Blimp-1	.	460.289	-1	3.96194	44
585	chr2L	65389	65859	CG32006	.	231.183	-1	3.27165	235
585	chr2L	65471	65895	Hr4	.	159.602	-1	2.94444	212
585	chr2L	65545	65965	pdm3	.	117.798	-1	3.39238	210
585	chr2L	66595	67031	Lpt	.	243.974	-1	4.0269	218
585	chr2L	66611	67051	CG6792	.	102.61	-1	4.18608	220

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

modERN TF Peaks (modERN_peaks) Track Description


	Description This track shows the transcription factor binding profiles that were produced by the model organism Encyclopedia of Regulatory Networks (modERN) project. The optimal peaks were obtained from the modERN project web site. The optimal peaks were then partitioned by developmental stages. The evidence tracks for the individual transcription factors are available through the ENCODE Portal. References Kudron MM, Victorsen A, Gevirtzman L, Hillier LW, Fisher WW, Vafeados D, Kirkey M, Hammonds AS, Gersch J, Ammouri H, Wall ML, Moran J, Steffen D, Szynkarek M, Seabrook-Sturgis S, Jameel N, Kadaba M, Patton J, Terrell R, Corson M, Durham TJ, Park S, Samanta S, Han M, Xu J, Yan KK, Celniker SE, White KP, Ma L, Gerstein M, Reinke V, Waterston RH. The ModERN Resource: Genome-Wide Binding Profiles for Hundreds of Drosophila and Caenorhabditis elegans Transcription Factors. Genetics. 2018 Mar;208(3):937-949.

Description